View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20329_high_5 (Length: 374)

Name: NF20329_high_5
Description: NF20329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20329_high_5
NF20329_high_5
[»] chr3 (9 HSPs)
chr3 (197-357)||(5565257-5565417)
chr3 (55-188)||(5565170-5565302)
chr3 (155-271)||(31896518-31896633)
chr3 (73-153)||(14175288-14175364)
chr3 (155-271)||(31945875-31945990)
chr3 (244-289)||(13539573-13539618)
chr3 (155-271)||(31912227-31912342)
chr3 (80-117)||(13539487-13539524)
chr3 (155-271)||(31688234-31688349)
[»] chr8 (1 HSPs)
chr8 (17-114)||(43618600-43618697)
[»] chr7 (1 HSPs)
chr7 (65-117)||(7854246-7854298)
[»] chr4 (1 HSPs)
chr4 (57-118)||(31952902-31952963)
[»] scaffold0007 (1 HSPs)
scaffold0007 (88-166)||(257658-257735)
[»] scaffold0003 (1 HSPs)
scaffold0003 (172-271)||(42747-42845)
[»] chr6 (1 HSPs)
chr6 (172-271)||(27444516-27444614)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 5565257 - 5565417
Alignment:
Q  197 gagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggtcgctgtcagaagcttcttttattttgcaaggttaattgttat 296  Q
    |||||| |||||||| ||||| ||| |||| ||||||||||| ||| || ||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  5565257 gagttgcaccaccgtcgttgaccactgcgtcggaattcgctcttcaccgtgtcgatgtcactgtcagaagcttcttttattttgcaaggttaattgttat 5565356  T
Q  297 tttcagttttcgtattcctcatttctaatactgaatcattcgttgattatgatctttgttt 357  Q
    |||| | ||| |||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  5565357 tttctgcttttgtattcctcatttctaatactgaatcattcattgatgttgatctttgttt 5565417  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 5565170 - 5565302
Alignment:
Q  55 ttttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcaccac 154  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  5565170 tttttcagccttctcccactaaagtaaaagcatcatagtcttaatctcttcgtcctctac-aaaacccacttgttttccaccacgccggagttgcaccac 5565268  T
Q  155 catcgttgaccatcgcatcggaatttgctcttca 188  Q
    | ||||||||||  || |||||||| ||||||||    
T  5565269 cgtcgttgaccactgcgtcggaattcgctcttca 5565302  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 31896633 - 31896518
Alignment:
Q  155 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggt 254  Q
    |||||||||||| ||| ||||||| ||||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||| ||| |||||| | ||    
T  31896633 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgtcagtgt 31896535  T
Q  255 cgctgtcagaagcttct 271  Q
    |||||| ||||||||||    
T  31896534 cgctgttagaagcttct 31896518  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 14175364 - 14175288
Alignment:
Q  73 ctaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcacca 153  Q
    ||||||||||||||||   |||||||| ||||| |||||||||||| |||| ||||||||||||||| |||||||||||||    
T  14175364 ctaaagtaaaagcatc---gtcttcatttcttcgtcctctacaaaa-cccatttgctttccaccacgccggagttgcacca 14175288  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 31945990 - 31945875
Alignment:
Q  155 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggt 254  Q
    |||||||||||| ||| ||||||| ||||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||| ||| |||| | | ||    
T  31945990 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31945892  T
Q  255 cgctgtcagaagcttct 271  Q
    |||||| ||||||||||    
T  31945891 cgctgttagaagcttct 31945875  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 13539573 - 13539618
Alignment:
Q  244 cgcgtcggggtcgctgtcagaagcttcttttattttgcaaggttaa 289  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||    
T  13539573 cgcgtcgggtttgctgtcagaagcttcttttattttgcaaggttaa 13539618  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 31912342 - 31912227
Alignment:
Q  155 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggt 254  Q
    |||||||||||| ||| ||||||| ||||||| | ||  || |||||| |||||| ||||| |||||||||| || |||||||| ||| |||| | | ||    
T  31912342 catcgttgaccaccgcgtcggaatatgctcttaaccgtgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31912244  T
Q  255 cgctgtcagaagcttct 271  Q
    |||||| ||||||||||    
T  31912243 cgctgttagaagcttct 31912227  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 13539487 - 13539524
Alignment:
Q  80 aaaagcatcatcgtcttcatctcttcatcctctacaaa 117  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  13539487 aaaagcatcattgtcttcatctcttcatcctctgcaaa 13539524  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 31688234 - 31688349
Alignment:
Q  155 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggt 254  Q
    |||||||||||| ||| || |||| ||||||| | |||  | |||||| |||||| ||||| ||||||||||  | |||||||| ||| |||| | | ||    
T  31688234 catcgttgaccaccgcgtcagaatatgctcttaaccgcgtcggagttgcaccacccttgttaatcaccgcgtcag-attcgctcttcatcgcgccagtgt 31688332  T
Q  255 cgctgtcagaagcttct 271  Q
    |||||| ||||||||||    
T  31688333 cgctgttagaagcttct 31688349  T

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Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 43618697 - 43618600
Alignment:
Q  17 acacaaaaactcttcttcttattccctcatttcgttaattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctac 114  Q
    |||||||||| ||||||||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43618697 acacaaaaacccttcttcttatgccctcatttgcttcattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcttctac 43618600  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 7854246 - 7854298
Alignment:
Q  65 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7854246 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctgcaaa 7854298  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 31952963 - 31952902
Alignment:
Q  57 ttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaa 118  Q
    |||| |||| ||||||||||| ||||  ||||||| ||||||||||||||||||||||||||    
T  31952963 ttttggcctcctcccactaaaataaagccatcatcatcttcatctcttcatcctctacaaaa 31952902  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 257658 - 257735
Alignment:
Q  88 catcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcaccaccatcgttgacca 166  Q
    |||||||||||| ||||| |||||||| |||||||| ||||||||| ||||| |||||||  |||||  ||||||||||    
T  257658 catcgtcttcatttcttcgtcctctac-aaaacccatttgctttcctccacgccggagttaaaccactgtcgttgacca 257735  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 42845 - 42747
Alignment:
Q  172 tcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggtcgctgtcagaagcttct 271  Q
    ||||||| ||||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||| | | |||  | | |||||||| ||||||||||    
T  42845 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 42747  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 271
Target Start/End: Original strand, 27444516 - 27444614
Alignment:
Q  172 tcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggtcgctgtcagaagcttct 271  Q
    ||||||| ||||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||| | | |||  | | |||||||| ||||||||||    
T  27444516 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 27444614  T

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