View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20329_low_12 (Length: 219)
Name: NF20329_low_12
Description: NF20329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20329_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 44691724 - 44691913
Alignment:
| Q |
23 |
aaacttcaattaaaccaaatcttcatgtcattccatgcttatcaatcacttggatatactttctctatggccaggataatttttattaggtgtcatcctg |
122 |
Q |
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| T |
44691724 |
aaacttcaattataccaaatcttcatgccattccatgcttatcaatcacatggatatactttctctttggccaggataatttttattaggtatcatcctg |
44691823 |
T |
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| Q |
123 |
gtgctatgttattttgattcctatatattttcttaactatggttatctctttctctagcattcgccactttcagtaccctatgctactcc |
212 |
Q |
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| T |
44691824 |
gtgctatgttattttgattcctatatattttcttaactatggttatctctttctctagcattcgccactttcagtactctatgatactcc |
44691913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 44631639 - 44631713
Alignment:
| Q |
101 |
atttttattaggtgtcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctctttc |
175 |
Q |
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| T |
44631639 |
atttttattaggtgtcatcctggtgctatgttattttgatttctatatgttttcttaactatggttatctctttc |
44631713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 44682041 - 44682193
Alignment:
| Q |
18 |
gtctcaaacttcaattaaaccaaatcttcatgtcattccatgcttatcaatcacttggatatactttctctatggccaggataatttttattaggtgtca |
117 |
Q |
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| T |
44682041 |
gtctcaaacatcaattaaaccaaatcttcatgtcattccatgcttatcaataacat--aaatactttctttttggctaggat--ttgtttttagttgtca |
44682136 |
T |
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| Q |
118 |
tcctggtgctatgttattttgattcctatatattttcttaactatggttatctcttt |
174 |
Q |
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| T |
44682137 |
tcctggtactatgttaatttgatttctttgtgttttcttaaatatggttatctcttt |
44682193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 44653027 - 44653179
Alignment:
| Q |
18 |
gtctcaaacttcaattaaaccaaatcttcatgtcattccatgcttatcaatcacttggatatactttctctatggccaggataatttttattaggtgtca |
117 |
Q |
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| T |
44653027 |
gtctcaaacatcaattaaaccaagtgttcatgtcattccatgcttaccaataacat--aaatactttctttttggctaggat--ttgtttttagttgtca |
44653122 |
T |
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| Q |
118 |
tcctggtgctatgttattttgattcctatatattttcttaactatggttatctcttt |
174 |
Q |
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| T |
44653123 |
tcctggtgctatgttaatttgattcctttgtgttttcttaaatatggttatctcttt |
44653179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 44631540 - 44631578
Alignment:
| Q |
18 |
gtctcaaacttcaattaaaccaaatcttcatgtcattcc |
56 |
Q |
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| T |
44631540 |
gtctcaaactttaattcaaccaaatcttcatgtcattcc |
44631578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 44637299 - 44637251
Alignment:
| Q |
18 |
gtctcaaacttcaattaaaccaaatcttcatgtcattccatgcttatca |
66 |
Q |
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| T |
44637299 |
gtctaaaacttcaatttaacgaaatcttcacgtcattccatgattatca |
44637251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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