View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20329_low_3 (Length: 492)
Name: NF20329_low_3
Description: NF20329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20329_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 58 - 439
Target Start/End: Original strand, 274714 - 275091
Alignment:
| Q |
58 |
acaagatattaccattactggtgccagcaccttgcctggtgatgaggtatatcttctaatcattcatttacttctacaaattgtatgtaatctttaccta |
157 |
Q |
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| T |
274714 |
acaagatattaccattactggtgccagcaccttgcctggtgatgaggtatatcttccaatcattcatttg----tataaattgtttgtaatccttatctg |
274809 |
T |
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| Q |
158 |
cttactacttcggaaggannnnnnnngttactccagcattgatgtgggaagtttttctggtgtttataattatctctcagatgatatacaagttgagagg |
257 |
Q |
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| T |
274810 |
cttgctacttctggaggattttttttgttactccagcattgatgtgggaagctgttccggtgtttataattatctcttggatgatgtacaggttgagagg |
274909 |
T |
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| Q |
258 |
gtggtcaaggaggctgagagattttcaaaggaggacaaggagaagagggatgcaatagacacaaagaaccaggcagactctgttgtctaccagactgaga |
357 |
Q |
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| T |
274910 |
atggtcaatgaggctgagagattttcaaaggaggacaaggagaagagggatgcaatagacacaaagaatcaggcggactctgttgtctaccagactgaaa |
275009 |
T |
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| Q |
358 |
agcaattgaaagagctgggagaaaaggtacccgactctgtgaaagagaaggtggaagcaaagctggtagagcttaaagatgc |
439 |
Q |
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| T |
275010 |
agcaattgaaagagctaggagaaaaggtacctggccctgtgaaagaaaaggttgaagcaaagttggtagagcttaaagatgc |
275091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 432 - 474
Target Start/End: Original strand, 275120 - 275162
Alignment:
| Q |
432 |
aaagatgccatggctgccctcaatcaggaagttatgcagcttg |
474 |
Q |
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| T |
275120 |
aaagatgccatggctgccctcaatcaggaagttatgcagcttg |
275162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 439
Target Start/End: Complemental strand, 43618599 - 43618536
Alignment:
| Q |
376 |
gagaaaaggtacccgactctgtgaaagagaaggtggaagcaaagctggtagagcttaaagatgc |
439 |
Q |
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| T |
43618599 |
gagaaaaggtacccagccctgtgaaagagaaggtggaagcaaagctggaagagcttaaagatgc |
43618536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 43618509 - 43618465
Alignment:
| Q |
430 |
ttaaagatgccatggctgccctcaatcaggaagttatgcagcttg |
474 |
Q |
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| T |
43618509 |
ttaaagatgccatggctgccctcaatcaggaagttatgcagcttg |
43618465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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