View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20329_low_5 (Length: 383)

Name: NF20329_low_5
Description: NF20329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20329_low_5
NF20329_low_5
[»] chr2 (3 HSPs)
chr2 (13-366)||(7127525-7127867)
chr2 (229-309)||(7124060-7124141)
chr2 (139-171)||(33390660-33390692)
[»] chr4 (1 HSPs)
chr4 (101-161)||(41364965-41365026)
[»] chr7 (1 HSPs)
chr7 (105-162)||(739259-739316)
[»] chr6 (1 HSPs)
chr6 (101-157)||(431028-431085)
[»] chr5 (1 HSPs)
chr5 (18-81)||(42273387-42273449)
[»] chr8 (2 HSPs)
chr8 (104-161)||(29749271-29749329)
chr8 (104-137)||(32616835-32616868)
[»] chr1 (1 HSPs)
chr1 (102-157)||(7210679-7210735)


Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 7127525 - 7127867
Alignment:
Q  13 aatatttcaatcaaacttaaatcattttttgaaaacacttcgtagcttgcttaatttagaaaagaaaaataatcctgcacctcccctcatattgttaaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127525 aatatttcaatcaaacttaaatcattttttgaaaacacttcgtagcttgcttaatttagaaaagaaaaataatcctgcacctcccctcatattgttaaat 7127624  T
Q  113 agcgcctatagcagcgctatagcatgttgcatagcagaatttgaacaaatcgttattgtcctacaatagtgctgggcagagtccatcgcagcaacatctg 212  Q
    |||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7127625 agcgcctat-----------agcatgttgcatagcagaatttgaacaaatcgttattgtcctacaatagtgctgggcagagtccattgcagcaacatctg 7127713  T
Q  213 tgtgtttatttcgattctgcaacaaatcagaaaagtcacagcctgcttagaatcctttgctagttcgcgaatccaaaaccatggtgccgatgctctaaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127714 tgtgtttatttcgattctgcaacaaatcagaaaagtcacagcctgcttagaatcctttgctagttcgcgaatccaaaaccatggtgccgatgctctaaaa 7127813  T
Q  313 tggacttgatacagagcttaacttcttccgggaggcaattcaaacgatcctcta 366  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7127814 tggacttgatacggagcttaacttcttccgggaggcaattcaaacgatcctcta 7127867  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 7124060 - 7124141
Alignment:
Q  229 ctgcaacaaatcagaaaa-gtcacagcctgcttagaatcctttgctagttcgcgaatccaaaaccatggtgccgatgctcta 309  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| ||||    
T  7124060 ctgcagcaaatcagaaaaagtcacagcctgcttagaatcctttgctagtttgcgaacccaaaaccaaggcgccgatggtcta 7124141  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 33390692 - 33390660
Alignment:
Q  139 ttgcatagcagaatttgaacaaatcgttattgt 171  Q
    |||||||||||||||||||||||||| ||||||    
T  33390692 ttgcatagcagaatttgaacaaatcgctattgt 33390660  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 41364965 - 41365026
Alignment:
Q  101 atattgttaaatagcgcctatagcagcgctatagca-tgttgcatagcagaatttgaacaaa 161  Q
    ||||||| |||||||| ||||| ||||||||||||| |||||| ||||||||||||||||||    
T  41364965 atattgtgaaatagcgtctataacagcgctatagcactgttgcgtagcagaatttgaacaaa 41365026  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 739316 - 739259
Alignment:
Q  105 tgttaaatagcgcctatagcagcgctatagcatgttgcatagcagaatttgaacaaat 162  Q
    |||||||||||||||||| |||||||||||| | ||||||||  |||||| |||||||    
T  739316 tgttaaatagcgcctataacagcgctatagcctattgcatagttgaatttaaacaaat 739259  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 431028 - 431085
Alignment:
Q  101 atattgttaaatagcgcctatagcagcgctatagca-tgttgcatagcagaatttgaa 157  Q
    |||||||||||||||| ||||||  ||||||||||| |||||| ||||||||||||||    
T  431028 atattgttaaatagcggctatagatgcgctatagcactgttgcgtagcagaatttgaa 431085  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 42273449 - 42273387
Alignment:
Q  18 ttcaatcaaacttaaatcattttttgaaaacacttcgtagcttgcttaatttagaaaagaaaaa 81  Q
    |||||||| |||| | |||||||| |||| || || ||||||||||||||||||||||||||||    
T  42273449 ttcaatcacacttcattcatttttagaaa-cattttgtagcttgcttaatttagaaaagaaaaa 42273387  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 29749271 - 29749329
Alignment:
Q  104 ttgttaaatagcgcctatagcagcgctatagca-tgttgcatagcagaatttgaacaaa 161  Q
    ||||||||||||   |||||||||||||||||| ||| |||||||| ||||||||||||    
T  29749271 ttgttaaatagcagttatagcagcgctatagcactgtagcatagcaaaatttgaacaaa 29749329  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 32616868 - 32616835
Alignment:
Q  104 ttgttaaatagcgcctatagcagcgctatagcat 137  Q
    ||||||||||||| ||||||||||||||||||||    
T  32616868 ttgttaaatagcggctatagcagcgctatagcat 32616835  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 7210735 - 7210679
Alignment:
Q  102 tattgttaaatagcgcctatagcagcgctatagc-atgttgcatagcagaatttgaa 157  Q
    ||||||||||||||| || |||||||| ||||||  ||||||||||| |||||||||    
T  7210735 tattgttaaatagcggctgtagcagcggtatagcgctgttgcatagcggaatttgaa 7210679  T

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