View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2032_low_2 (Length: 425)

Name: NF2032_low_2
Description: NF2032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2032_low_2
NF2032_low_2
[»] chr4 (6 HSPs)
chr4 (66-416)||(56490469-56490822)
chr4 (131-293)||(9591966-9592124)
chr4 (149-269)||(17028430-17028546)
chr4 (213-287)||(33819525-33819596)
chr4 (16-46)||(56490389-56490419)
chr4 (239-282)||(19898378-19898422)
[»] chr7 (2 HSPs)
chr7 (149-282)||(23428638-23428767)
chr7 (160-264)||(42594060-42594158)
[»] chr2 (7 HSPs)
chr2 (131-294)||(17353673-17353832)
chr2 (160-264)||(41342117-41342217)
chr2 (161-279)||(34213810-34213923)
chr2 (150-257)||(21430921-21431026)
chr2 (172-238)||(29453935-29454001)
chr2 (163-264)||(8910311-8910408)
chr2 (166-261)||(19033639-19033730)
[»] chr6 (2 HSPs)
chr6 (160-294)||(291991-292122)
chr6 (133-264)||(11082804-11082930)
[»] chr1 (5 HSPs)
chr1 (163-294)||(28007088-28007217)
chr1 (147-294)||(45438540-45438684)
chr1 (133-264)||(10918134-10918259)
chr1 (162-226)||(32992047-32992111)
chr1 (200-287)||(30937155-30937239)
[»] chr3 (8 HSPs)
chr3 (135-269)||(54377879-54378007)
chr3 (149-238)||(33756903-33756992)
chr3 (163-264)||(11559362-11559459)
chr3 (163-264)||(11568631-11568728)
chr3 (166-226)||(50093160-50093220)
chr3 (239-282)||(54783489-54783533)
chr3 (149-187)||(41946896-41946934)
chr3 (365-419)||(25746119-25746175)
[»] chr8 (5 HSPs)
chr8 (163-264)||(9293348-9293445)
chr8 (163-237)||(2751952-2752026)
chr8 (160-269)||(25381028-25381133)
chr8 (214-294)||(13322735-13322811)
chr8 (133-177)||(38759079-38759122)
[»] chr5 (5 HSPs)
chr5 (133-294)||(37192860-37193017)
chr5 (133-288)||(26708808-26708959)
chr5 (133-288)||(26978542-26978693)
chr5 (160-198)||(7031228-7031266)
chr5 (166-288)||(29068999-29069117)
[»] scaffold0092 (1 HSPs)
scaffold0092 (163-238)||(53353-53428)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 66 - 416
Target Start/End: Original strand, 56490469 - 56490822
Alignment:
Q  66 cattcatataattgtttttacgtaattcat--gtttttatattggatgttgagtcaacgacggatccatggatccataaattttaaataagtggaatcaa 163  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  56490469 cattcatataatt-tttttacgtaattcatatgtttttatattggatgttgagtcaacgacggatccatggatccataaattttaaataagtggagtcaa 56490567  T
Q  164 agttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttgatttt 263  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  56490568 agttatatcataaaaatttatatagaattgtataattgcataagcgtgtaaaaattatataagttatgtttataaataattgctctaaaatgttgatttt 56490667  T
Q  264 tgaaaatatttttccatttgtagcaaagtatnnnnnnntataacactaattaattannnnnnnatccagcaaagtcaatcatagtctttttcaacaaatt 363  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||    
T  56490668 tgaaaatatttttccatttgtagcaaagtataaaaaaatataacactaattaattatttttttatccagcaacgtcaatcatagtctttttcaacaaatt 56490767  T
Q  364 cttttcatccaccaatgtcaacc--agagtctttttcaacaaatataagaataat 416  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||||||||    
T  56490768 cttttcatccaccaatgtcaatcagagagtctttttcaacaaatataagaataat 56490822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 131 - 293
Target Start/End: Complemental strand, 9592124 - 9591966
Alignment:
Q  131 atggatccataaattttaaataagtggaatcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatat 230  Q
    ||||||||| ||||||||| |||||||  ||||| |||||||||||||||||||||| || |  ||||    ||||||||| ||||||||| |||| |||    
T  9592124 atggatccaaaaattttaa-taagtggggtcaaaattatatcataaaaatttatataaaacttaataaacatgtaagcgtgcaaaaattatgtaagttat 9592026  T
Q  231 gtttataaataattgctctaaaatgttga-tttttgaaaatatttttccatttgtagcaaagta 293  Q
     |||||||    ||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||    
T  9592025 atttataa----ttgctataaaatgttgagttttttaaaatatttttccatttctagcagagta 9591966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 269
Target Start/End: Complemental strand, 17028546 - 17028430
Alignment:
Q  149 aataagtggaatcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctc 248  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| |||||  ||||||| |||  ||||||||| ||  ||| |||    ||||||||      
T  17028546 aataagtgggatcaaagttatatcataaaaatttatataaaattttataaacgcgtaagtgtgcgaaaattatacaatttatattt----ataattgcca 17028451  T
Q  249 taaaatgttgatttttgaaaa 269  Q
    |||||||||||||||| ||||    
T  17028450 taaaatgttgattttttaaaa 17028430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 287
Target Start/End: Complemental strand, 33819596 - 33819525
Alignment:
Q  213 aaaaattatataagatatgtttataaataattgctctaaaatgttgatttttg-aaaatatttttccatttgtagc 287  Q
    ||||||||||| || |||||||||||    ||||||||||||||||||||| | ||||||||||||||||| ||||    
T  33819596 aaaaattatatgagttatgtttataa----ttgctctaaaatgttgattttagtaaaatatttttccatttctagc 33819525  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 56490389 - 56490419
Alignment:
Q  16 atatttaaagacagggttcacatgtagaaat 46  Q
    |||||||||||||||||||||||||||||||    
T  56490389 atatttaaagacagggttcacatgtagaaat 56490419  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 19898422 - 19898378
Alignment:
Q  239 ataattgctctaaaatgttgat-ttttgaaaatatttttccattt 282  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||    
T  19898422 ataattgctttaaaatgttgattttttaaaaatatttttccattt 19898378  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 149 - 282
Target Start/End: Original strand, 23428638 - 23428767
Alignment:
Q  149 aataagtggaatcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctc 248  Q
    |||||||||  |||||||||||||||||||||||||||| |||| ||||| ||||||||| || |||||||||||||| |||||||    |||||||||     
T  23428638 aataagtggggtcaaagttatatcataaaaatttatataaaattatataaatgcgtaagcatgcaaaaattatataagttatgttt----ataattgctt 23428733  T
Q  249 taaaatgttgatttttgaaaatatttttccattt 282  Q
    |||||||||||||| | |||||||||||||||||    
T  23428734 taaaatgttgatttcttaaaatatttttccattt 23428767  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 42594060 - 42594158
Alignment:
Q  160 tcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttga 259  Q
    ||||||||||| |||||| ||||||||| || | |||||  |||||| | ||||||  ||||||| | |||||||||||    ||| |||||||||||||    
T  42594060 tcaaagttataccataaagatttatataaaactatataaacgcgtaaacatgtaaa--ttatataggttatgtttataa----ttgttctaaaatgttga 42594153  T

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Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 131 - 294
Target Start/End: Original strand, 17353673 - 17353832
Alignment:
Q  131 atggatccataaattttaaataagtggaatcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatat 230  Q
    ||||||||||||||||||| |||||||  |||||||||||||||||||||||||||| || | |||||  | ||| ||||| ||||||| |||| | |||    
T  17353673 atggatccataaattttaa-taagtggggtcaaagttatatcataaaaatttatataaaactatataaacgtgtatgcgtgcaaaaattgtataggttat 17353771  T
Q  231 gtttataaataattgctctaaaatgttgatttttg-aaaatatttttccatttgtagcaaagtat 294  Q
    ||||    ||||||||||||||||||||||||||| || ||||||||| |||| ||||| |||||    
T  17353772 gttt----ataattgctctaaaatgttgatttttgtaagatatttttctatttctagcagagtat 17353832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 264
Target Start/End: Complemental strand, 41342217 - 41342117
Alignment:
Q  160 tcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttga 259  Q
    |||||||||||||||||||||||||||| || | |||||  | |||||||||||||||||||||| | |||||||    ||||||||| |||||||||||    
T  41342217 tcaaagttatatcataaaaatttatataaaactatataaacgtgtaagcgtgtaaaaattatatatgttatgttt----ataattgctttaaaatgttga 41342122  T
Q  260 ttttt 264  Q
    |||||    
T  41342121 ttttt 41342117  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 279
Target Start/End: Original strand, 34213810 - 34213923
Alignment:
Q  161 caaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttgat 260  Q
    |||| |||||||||||||||||||||  || | ||||| ||| |||||||| ||||||||| |||| |||||||||||    ||||| ||||||||||||    
T  34213810 caaaattatatcataaaaatttatatcaaactatataaatgcataagcgtgcaaaaattat-taagttatgtttataa----ttgctttaaaatgttgat 34213904  T
Q  261 ttttgaaaatatttttcca 279  Q
    |||| ||||||||||||||    
T  34213905 tttttaaaatatttttcca 34213923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 21431026 - 21430921
Alignment:
Q  150 ataagtggaatcaaagttatatcataaaaatttatatagaat--tgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgct 247  Q
    ||||||||| |||||||||||||||||||||||||||| ||   | |||||  ||||||| ||| |||||| ||||||| |||||||    |||||||||    
T  21431026 ataagtggagtcaaagttatatcataaaaatttatatataaagctatataaacgcgtaagtgtgcaaaaataatataagttatgttt----ataattgct 21430931  T
Q  248 ctaaaatgtt 257  Q
    ||||||||||    
T  21430930 ctaaaatgtt 21430921  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 29453935 - 29454001
Alignment:
Q  172 cataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataa 238  Q
    |||||||||||||||| |||| ||||| ||||||| |||| |||||||||| ||| ||| |||||||    
T  29453935 cataaaaatttatataaaattttataaatgcgtaaacgtgcaaaaattatacaagttatatttataa 29454001  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 8910408 - 8910311
Alignment:
Q  163 aagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttgattt 262  Q
    ||||||||||||||||| ||||||| |||| |||||   ||||||||||  ||||||||| ||| ||| |||    |||||||| |||||||||| ||||    
T  8910408 aagttatatcataaaaaattatataaaattttataaacacgtaagcgtgcgaaaattatacaagttatattt----ataattgccctaaaatgttaattt 8910313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 19033639 - 19033730
Alignment:
Q  166 ttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttgatt 261  Q
    ||||||| ||| |||||||||| |||| |||||   | |||| ||  |||||||||||||| |||||||||||    |||||||||||||||||||    
T  19033639 ttatatcgtaagaatttatataaaattatataaactcataagtgtacaaaaattatataagttatgtttataa----ttgctctaaaatgttgatt 19033730  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 294
Target Start/End: Original strand, 291991 - 292122
Alignment:
Q  160 tcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttga 259  Q
    |||||||||||||||||||||||||||| || | ||||| ||||||||| || |||||||||||| | |||||||    |||||||||||||||||||      
T  291991 tcaaagttatatcataaaaatttatataaaactatataaatgcgtaagcatgcaaaaattatatatgttatgttt----ataattgctctaaaatgttat 292086  T
Q  260 tttttgaaa-atatttttccatttgtagcaaagtat 294  Q
    ||||| ||| |||||||||  ||| ||||| |||||    
T  292087 tttttaaaagatatttttctgtttctagcagagtat 292122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 264
Target Start/End: Original strand, 11082804 - 11082930
Alignment:
Q  133 ggatccataaattttaaataagtggaatcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgt 232  Q
    ||||||| ||||||||| ||||||   || || |||||||||||||||||||||| |||| ||||| ||| |||||||| ||||||||||||   ||| |    
T  11082804 ggatccagaaattttaa-taagtgaggtcgaatttatatcataaaaatttatataaaattatataaatgcataagcgtgcaaaaattatatagattatat 11082902  T
Q  233 ttataaataattgctctaaaatgttgattttt 264  Q
    ||    |||||||||||||||| |||||||||    
T  11082903 tt----ataattgctctaaaatcttgattttt 11082930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 294
Target Start/End: Original strand, 28007088 - 28007217
Alignment:
Q  163 aagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttgat-- 260  Q
    |||||||||||||||||| |||||| |||| ||||| | ||||||| ||  ||||||||||||| ||| |||    ||||||||||||||||||||||      
T  28007088 aagttatatcataaaaatatatataaaattttataaatacgtaagcatgcgaaaattatataagttatattt----ataattgctctaaaatgttgattc 28007183  T
Q  261 ttttgaaaatatttttccatttgtagcaaagtat 294  Q
    |||| ||||||||| ||||||| ||||| |||||    
T  28007184 tttttaaaatatttgtccatttctagcagagtat 28007217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 147 - 294
Target Start/End: Complemental strand, 45438684 - 45438540
Alignment:
Q  147 taaataagtggaatcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgc 246  Q
    ||||||||||   ||||||||||||||||||| ||||| || |||| |||||  ||||||| || ||||||||||||||  |||||||    |||||| |    
T  45438684 taaataagtgaggtcaaagttatatcataaaattttatttaaaattatataaacgcgtaagtgtataaaaattatataaattatgttt----ataattac 45438589  T
Q  247 tctaaaatgttga-tttttgaaaatatttttccatttgtagcaaagtat 294  Q
    || ||||| |||| ||||| ||||||||||| ||||| ||||| |||||    
T  45438588 tcaaaaatattgattttttaaaaatattttttcatttctagcatagtat 45438540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 10918259 - 10918134
Alignment:
Q  133 ggatccataaattttaaataagtggaatcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgt 232  Q
    ||||||| ||||||||| |||||||  |||| |||||||||| |||||||||||| || | |||||  ||||||| |||  ||||||||| ||| ||| |    
T  10918259 ggatccagaaattttaa-taagtggggtcaa-gttatatcatgaaaatttatataaaactttataaacgcgtaagtgtgcgaaaattatacaagttatat 10918162  T
Q  233 ttataaataattgctctaaaatgttgattttt 264  Q
    ||    ||||||||||||||||||||||||||    
T  10918161 tt----ataattgctctaaaatgttgattttt 10918134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 32992111 - 32992047
Alignment:
Q  162 aaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataag 226  Q
    |||||||||||||||||||||||||| || | ||||| | ||||||| || ||||||||||||||    
T  32992111 aaagttatatcataaaaatttatataaaaatatataaatacgtaagcatgaaaaaattatataag 32992047  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 30937239 - 30937155
Alignment:
Q  200 tgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttgatttt-tgaaaatatttttccatttgtagc 287  Q
    ||||||| |||| |||| ||||||| | |||||||||||    ||||||||||||||||||||| | || |||||||||||||| ||||    
T  30937239 tgcgtaaacgtgcaaaagttatataggttatgtttataa----ttgctctaaaatgttgattttcttaagatatttttccatttctagc 30937155  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 269
Target Start/End: Original strand, 54377879 - 54378007
Alignment:
Q  135 atccataaattttaaataagtggaatcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgttt 234  Q
    ||||||||||||||| |||||||  |||| ||||||||||||||||||||||| || | ||||| || |||||||||| ||| ||||| ||| ||    |    
T  54377879 atccataaattttaa-taagtggggtcaa-gttatatcataaaaatttatataaaactttataaatgtgtaagcgtgtgaaagttatacaagtta----t 54377972  T
Q  235 ataaataattgctctaaaatgttgatttttgaaaa 269  Q
    ||| |||||||| ||||||||||||||||| ||||    
T  54377973 atatataattgccctaaaatgttgattttttaaaa 54378007  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 33756903 - 33756992
Alignment:
Q  149 aataagtggaatcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataa 238  Q
    ||||| ||| |||||  |||||||||||||||||||||| |||| |||||   |||||||||| ||||||||| |||  |||||||||||    
T  33756903 aataaatgggatcaatattatatcataaaaatttatataaaattatataaactcgtaagcgtgcaaaaattatgtaaattatgtttataa 33756992  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 11559362 - 11559459
Alignment:
Q  163 aagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttgattt 262  Q
    ||||||||||||||||||||||||| || | |||||  |||||||||||  ||||||||| ||| ||| |||||||    |||  |||||||||||||||    
T  11559362 aagttatatcataaaaatttatataaaactttataaacgcgtaagcgtgcgaaaattatacaagttatatttataa----ttgtcctaaaatgttgattt 11559457  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 11568631 - 11568728
Alignment:
Q  163 aagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttgattt 262  Q
    ||||||||||||||||||||||||| || | |||||  |||||||||||  ||||||||| ||| ||| |||||||    |||  |||||||||||||||    
T  11568631 aagttatatcataaaaatttatataaaactttataaacgcgtaagcgtgcgaaaattatacaagttatatttataa----ttgtcctaaaatgttgattt 11568726  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 50093160 - 50093220
Alignment:
Q  166 ttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataag 226  Q
    |||||||||||||||||||||  |||| |||||  |||||||||||  |||||||||||||    
T  50093160 ttatatcataaaaatttatattaaattttataaacgcgtaagcgtgcgaaaattatataag 50093220  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 54783489 - 54783533
Alignment:
Q  239 ataattgctctaaaatgttgatttttga-aaatatttttccattt 282  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  54783489 ataattgctctaaaatgttgattttttataaatatttttccattt 54783533  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 41946934 - 41946896
Alignment:
Q  149 aataagtggaatcaaagttatatcataaaaatttatata 187  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  41946934 aataagtggggtcaaagttatatcataaaaatttatata 41946896  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 25746175 - 25746119
Alignment:
Q  365 ttttcatccaccaatgtcaaccaga--gtctttttcaacaaatataagaataattta 419  Q
    |||||| ||||||||||||| || |  ||||||||||||||||||||||||| ||||    
T  25746175 ttttcaaccaccaatgtcaatcacatagtctttttcaacaaatataagaatagttta 25746119  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 9293348 - 9293445
Alignment:
Q  163 aagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttgattt 262  Q
    ||||||||||||||||||||||||| |||| |||||  |||||||||||  ||||||||| ||| ||| |||    |||||||| |||||||||||||||    
T  9293348 aagttatatcataaaaatttatataaaattttataaacgcgtaagcgtgcgaaaattatacaagctatattt----ataattgccctaaaatgttgattt 9293443  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 2752026 - 2751952
Alignment:
Q  163 aagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttata 237  Q
    ||||||||||||||||||||||||| |||| ||||  ||||||||||||  ||||||||| ||| ||| ||||||    
T  2752026 aagttatatcataaaaatttatataaaattttatacatgcgtaagcgtgcgaaaattatacaagttatatttata 2751952  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 25381133 - 25381028
Alignment:
Q  160 tcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttga 259  Q
    |||||||||||| ||||||||||||||| || | |||||   ||||||||||  ||||||||||||| ||| |||    ||||||||  |||||||||||    
T  25381133 tcaaagttatattataaaaatttatataaaactttataaactcgtaagcgtgcgaaaattatataagttatattt----ataattgccataaaatgttga 25381038  T
Q  260 tttttgaaaa 269  Q
    ||||| ||||    
T  25381037 tttttaaaaa 25381028  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 13322811 - 13322735
Alignment:
Q  214 aaaattatataagatatgtttataaataattgctctaaaatgttgatttttgaaa-atatttttccatttgtagcaaagtat 294  Q
    |||||||||| || |||||||    |||||||||||||||||||||||||| ||| |||||||| ||||| ||||| |||||    
T  13322811 aaaattatattagttatgttt----ataattgctctaaaatgttgattttttaaagatattttt-catttctagcagagtat 13322735  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 38759122 - 38759079
Alignment:
Q  133 ggatccataaattttaaataagtggaatcaaagttatatcataaa 177  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||    
T  38759122 ggatccataaattttaa-taagtggagtcaaacttatatcataaa 38759079  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 133 - 294
Target Start/End: Original strand, 37192860 - 37193017
Alignment:
Q  133 ggatccataaattttaaataagtggaatcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgt 232  Q
    ||||||||||||||||| ||||||   |||| ||||||||||||||||||||||| || | |||||  |||||||||||  ||||||||| ||| ||| |    
T  37192860 ggatccataaattttaa-taagtgaggtcaa-gttatatcataaaaatttatataaaactttataaacgcgtaagcgtgcgaaaattatacaagttatat 37192957  T
Q  233 ttataaataattgctctaaaatgttgattttt--gaaaatatttttccatttgtagcaaagtat 294  Q
    ||||||    |||  |||||||||||||||||   ||||||||| ||||||| ||||| |||||    
T  37192958 ttataa----ttgtcctaaaatgttgatttttaaaaaaatatttgtccatttctagcagagtat 37193017  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 288
Target Start/End: Complemental strand, 26708959 - 26708808
Alignment:
Q  133 ggatccataaattttaaataagtggaatcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgt 232  Q
    ||||||| ||||||||| |||||||  |||| ||||||||||||||||||||||| || | |||||  | |||||| ||  ||||||||| ||| ||| |    
T  26708959 ggatccaaaaattttaa-taagtggggtcaa-gttatatcataaaaatttatataaaactttataaacgtgtaagcttgcgaaaattatacaagttatat 26708862  T
Q  233 ttataaataattgctctaaaatgttga--tttttgaaaatatttttccatttgtagca 288  Q
    ||    |||||||| ||||||||||||  ||||| ||||||||| ||||||| |||||    
T  26708861 tt----ataattgccctaaaatgttgatttttttaaaaatatttatccatttctagca 26708808  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 288
Target Start/End: Complemental strand, 26978693 - 26978542
Alignment:
Q  133 ggatccataaattttaaataagtggaatcaaagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgt 232  Q
    ||||||| ||||||||| |||||||  |||| ||||||||||||||||||||||| || | |||||  | |||||| ||  ||||||||| ||| ||| |    
T  26978693 ggatccaaaaattttaa-taagtggggtcaa-gttatatcataaaaatttatataaaactttataaacgtgtaagcttgcgaaaattatacaagttatat 26978596  T
Q  233 ttataaataattgctctaaaatgttga--tttttgaaaatatttttccatttgtagca 288  Q
    ||    |||||||| ||||||||||||  ||||| ||||||||| ||||||| |||||    
T  26978595 tt----ataattgccctaaaatgttgatttttttaaaaatatttatccatttctagca 26978542  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 7031228 - 7031266
Alignment:
Q  160 tcaaagttatatcataaaaatttatatagaattgtataa 198  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  7031228 tcaaagttatatcataaaaatttatataaaattatataa 7031266  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 288
Target Start/End: Original strand, 29068999 - 29069117
Alignment:
Q  166 ttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataaataattgctctaaaatgttgatttttg 265  Q
    |||||||||||||||||||||| || | |||||  |||||||||||  ||||||||| ||| |||  ||    |||||||| |||||||  |  |||||     
T  29068999 ttatatcataaaaatttatataaaactttataaacgcgtaagcgtgcgaaaattatacaagttatactt----ataattgccctaaaataatttttttta 29069094  T
Q  266 aaaatatttttccatttgtagca 288  Q
    ||||||||| ||||||| |||||    
T  29069095 aaaatatttgtccatttctagca 29069117  T

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Target: scaffold0092 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 53353 - 53428
Alignment:
Q  163 aagttatatcataaaaatttatatagaattgtataattgcgtaagcgtgtaaaaattatataagatatgtttataa 238  Q
    ||||||||||||||||||||||||| || | ||||| ||||||||||||  ||||||||| ||| ||| |||||||    
T  53353 aagttatatcataaaaatttatataaaactttataaatgcgtaagcgtgcgaaaattatacaagttatatttataa 53428  T

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