View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2032_low_4 (Length: 366)
Name: NF2032_low_4
Description: NF2032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2032_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 19702994 - 19703319
Alignment:
| Q |
16 |
aatactactgaccatcaaacttatcgttctgagcggcgaccataggggaaccctgaagctgtaatgtaagaaaacaagaaataagaaagactaaaaaggc |
115 |
Q |
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| T |
19702994 |
aatactactgaccatcaaacttatcgttctgagcggcgaccataggggaaccctgaagctgtaatgtaagaaaacaagaaataagaaagactaaaaagga |
19703093 |
T |
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| Q |
116 |
aaacatggatgttaatgaatgattggtaactgataagtatctaccttgcaggacaagagcttaatgcaacagccattgggttgttgttcaactttgacaa |
215 |
Q |
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| T |
19703094 |
aaacatggatgttaatgaatgattg-------ataagtatctaccttgcaggacaagagcttaatgcaacagccattgggttgttgttcaactttgacaa |
19703186 |
T |
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| Q |
216 |
gcaaaacaggacaaacctcaaatgtgaaaaacttaattgtgtaaacataacacctgaatgtatcctcactcacacgttcaatcctttcagcgtctaacac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19703187 |
gcaaaacaggacaaacctcaaatgtgaaaaacttaattgtgtaaacataacacctgaatgtatcctcactcacacgttcaatcctttcagcgtctaacac |
19703286 |
T |
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| Q |
316 |
tgaatattgacttgctggtaacctcatatattc |
348 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
19703287 |
tgaatattgacttgctggtaacctcatatattc |
19703319 |
T |
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