View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20330_high_10 (Length: 312)
Name: NF20330_high_10
Description: NF20330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20330_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 21608025 - 21607727
Alignment:
| Q |
1 |
taacaaattgacatcctgcaggaacatgtttcgcaagttctctaaagtcataatctgcataacacaggtaacatatagccaccaaatacatcagagattg |
100 |
Q |
| |
|
||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
21608025 |
taacaaattaacatccttcaggaacatgcttcgcaagttctctaaagtcataatctgcataacacaagtaacagatagccaccaaacacatcagagattt |
21607926 |
T |
|
| Q |
101 |
tacaaggagaaagagagcgaatacaatcaaagagaaaacatattaccaaaaatattagagttaaggttcaaacatatggcttctacgtaactagtgttgt |
200 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
21607925 |
tatatggagaaagagagcgaatacaatcaaagagaaaacatattaccaaaaatattagagttaaggttcaaacatatggcttctacataactagtgtcgt |
21607826 |
T |
|
| Q |
201 |
tatcgtattttggcttactctttgacctaaatccatgtccagcaaagtnnnnnnncaa-gtatc-cccgctttaaggttcttaaacaaatccagcaaca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21607825 |
tatcgtattttggcttactctttgacctaaatccatgtccagcaaagtaaaaaaacaaggtatcacccgctttaaggttcttaaacaaatccagcaaca |
21607727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 21608623 - 21608921
Alignment:
| Q |
1 |
taacaaattgacatcctgcaggaacatgtttcgcaagttctctaaagtcataatctgcataacacaggtaacatatagccaccaaatacatcagagattg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
21608623 |
taacaaattgacatccttcaggaacatgcttcgcaagttctctaaagtcataatctgcataacacaagtaacagatagccaccaaacacatcagagattg |
21608722 |
T |
|
| Q |
101 |
tacaaggagaaagagagcgaatacaatcaaagagaaaacatattaccaaaaatattagagttaaggttcaaacatatggcttctacgtaactagtgttgt |
200 |
Q |
| |
|
|| | |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
21608723 |
tatatggagaaagagagcgaaaacaattaaagagaaaacatattaccaaaaatattagagttaaggttcaaacatatggcttctacgtaactagtatcgt |
21608822 |
T |
|
| Q |
201 |
tatcgtattttggcttactctttgacctaaatccatgtccagcaaagtnnnnnnncaa-gtat-ccccgctttaaggttcttaaacaaatccagcaaca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21608823 |
tatcgtattttggcttactctttgacctaaatccatgtccagcaaagtaaaaaaacaaggtatcccccgctttaaggttcttaaacaaatccagcaaca |
21608921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University