View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20330_high_3 (Length: 351)
Name: NF20330_high_3
Description: NF20330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20330_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 8007313 - 8006978
Alignment:
| Q |
13 |
aatattaaccatcagatgtgatttttattcatttttgaaccgtcgattcctttgcccnnnnnnnnnnnnnnnnnnntagaagttagatagatatatgcac |
112 |
Q |
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| T |
8007313 |
aatattaaccatcagatgtgatttttattcatttt-gaaccgtcgattcctttgtccaaaaaaattgtgaaaaaaatacaagttagatagatatatacac |
8007215 |
T |
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| Q |
113 |
atgtgactgcatataatcctgtgttgggcgtcgcattatgaaactttagtcttttttacattattccttgcttaatcttcattttctgatatttttagcc |
212 |
Q |
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| T |
8007214 |
ttgtgactgcatataatcctgtgttgggcgtcgcattatgaaactttagtcttttttacattattccttgcttaatcttcattttctgatatttttagcc |
8007115 |
T |
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| Q |
213 |
tgaagattcgaccaatgcatcatggtattttaagtcatctagaattattattttttaattatctcattataatatcaaattttgcagttggaaatgctca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8007114 |
tgaagattcgaccaatgcatcatggtattttaagtcatctagaattattattttttaattatctcattataatataaaattttgcagttggaaatgctca |
8007015 |
T |
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| Q |
313 |
agaatccagagacaacgaggtcaaagatcaatggaag |
349 |
Q |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
8007014 |
agaatccagagacaacgaggtcgaagatcaatggaag |
8006978 |
T |
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