View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20330_low_1 (Length: 336)
Name: NF20330_low_1
Description: NF20330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20330_low_1 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 18342681 - 18342984
Alignment:
| Q |
18 |
ctcgtattataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342681 |
ctcgtattataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttgga |
18342780 |
T |
|
| Q |
118 |
tttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccc |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342781 |
tttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccc |
18342880 |
T |
|
| Q |
218 |
tgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcc |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342881 |
tgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcc |
18342980 |
T |
|
| Q |
318 |
tatg |
321 |
Q |
| |
|
|||| |
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|
| T |
18342981 |
tatg |
18342984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 48288621 - 48288862
Alignment:
| Q |
18 |
ctcgtattataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaat----tcgagttccttt |
113 |
Q |
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|||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
48288621 |
ctcgtattataatacctcggatgttaatgaaactatttaagtgaaatttacctgtctcaattctcgggctattgcaaaaaaaaaaaaatcgagttccttt |
48288720 |
T |
|
| Q |
114 |
tggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattaca |
213 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||| |||| | |
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| T |
48288721 |
tgaatttccttctttatcaatgagaaccgccgcattatcatcatactttattattatatcatcaccacgttttagttctttacaa----gtataatt-ga |
48288815 |
T |
|
| Q |
214 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
260 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| |||| |||| |
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| T |
48288816 |
ctcctaatcacttcagatctttctaaagatgaatttgatactccttt |
48288862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 61 - 321
Target Start/End: Original strand, 36840497 - 36840757
Alignment:
| Q |
61 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840497 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
36840596 |
T |
|
| Q |
161 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840597 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
36840696 |
T |
|
| Q |
261 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840697 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
36840757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 71 - 321
Target Start/End: Complemental strand, 164630 - 164380
Alignment:
| Q |
71 |
gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattat |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
164630 |
gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat |
164531 |
T |
|
| Q |
171 |
accattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
164530 |
accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca |
164431 |
T |
|
| Q |
271 |
gcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
164430 |
tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
164380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 277415 - 277629
Alignment:
| Q |
24 |
ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttcct |
123 |
Q |
| |
|
||||||||| || || ||||||||||||||||| || ||||| || | ||||||||| ||| || ||| ||||| ||||||||||||||| || ||| |
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| T |
277415 |
ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcct |
277514 |
T |
|
| Q |
124 |
tctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatca |
223 |
Q |
| |
|
| || |||||| | |||||| ||||| |||||||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| | || | |
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| T |
277515 |
ttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatta |
277614 |
T |
|
| Q |
224 |
cttcagatctttcta |
238 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
277615 |
cttcggatctttcta |
277629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 71 - 321
Target Start/End: Original strand, 14249096 - 14249346
Alignment:
| Q |
71 |
gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatactttattattat |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
14249096 |
gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat |
14249195 |
T |
|
| Q |
171 |
accattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
14249196 |
accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca |
14249295 |
T |
|
| Q |
271 |
gcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14249296 |
tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
14249346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 1036 - 733
Alignment:
| Q |
18 |
ctcgtattataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttgga |
117 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||| |
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|
| T |
1036 |
ctcgtcttataatacctcgggagctaatgaaactattttagtgaaatttaactgtctcaattcccgggcgatcgcaccaaaaattcgagttccttttgga |
937 |
T |
|
| Q |
118 |
tttccttctttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccc |
217 |
Q |
| |
|
|||||||||| |||||||| ||| || ||||| |||||||| |||||| || || || ||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
936 |
tttccttcttgatcaatgacaacggcagcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacaagtacgtacaattacagctc |
837 |
T |
|
| Q |
218 |
tgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcc |
317 |
Q |
| |
|
|||||||||| |||||||||| || || |||||||||||||| ||||| |||||||||| || ||||||||||| |||||| || |||||||||||||| |
|
|
| T |
836 |
tgatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataacgtcaccaatatgagcatatcggcgattactagctcc |
737 |
T |
|
| Q |
318 |
tatg |
321 |
Q |
| |
|
|||| |
|
|
| T |
736 |
tatg |
733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 214 - 321
Target Start/End: Original strand, 46699127 - 46699234
Alignment:
| Q |
214 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
|
| Q |
314 |
ctcctatg |
321 |
Q |
| |
|
|||||||| |
|
|
| T |
46699227 |
ctcctatg |
46699234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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