View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20330_low_2 (Length: 238)

Name: NF20330_low_2
Description: NF20330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20330_low_2
NF20330_low_2
[»] chr5 (3 HSPs)
chr5 (1-222)||(37902159-37902385)
chr5 (4-100)||(34383505-34383601)
chr5 (121-222)||(14662240-14662341)
[»] chr8 (2 HSPs)
chr8 (8-100)||(11425752-11425844)
chr8 (101-166)||(4165565-4165631)
[»] chr4 (1 HSPs)
chr4 (8-100)||(5415443-5415535)
[»] chr2 (4 HSPs)
chr2 (112-201)||(41317384-41317473)
chr2 (8-99)||(33386926-33387017)
chr2 (99-180)||(40634996-40635077)
chr2 (99-166)||(13338603-13338671)
[»] chr7 (1 HSPs)
chr7 (8-97)||(44396127-44396216)
[»] chr3 (1 HSPs)
chr3 (99-222)||(2905619-2905741)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37902159 - 37902385
Alignment:
Q  1 gtttcttagagcataattataggtgc-----aaaagcaccgtggtataactgagccaaatgaaaatatgttagaaagcaactgatatttagcatgcaagc 95  Q
    |||||||| |||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37902159 gtttcttaaagcataattataggtgctttgcaaaagcaccgtggtataactgagccaaatgaaaatatgttagaaagcaactgatatttagcatgcaagc 37902258  T
Q  96 aagtaagagcacctccagcggcttctttttcaaattcgtccgccaggtgtaacatcaaatatgagttttttatgccaaaaatcatccaaggagttggaca 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37902259 aagtaagagcacctccagcggcttctttttcaaattcgtccgccaggtttaacatcaaatatgagttttttatgccaaaaatcatccaaggagttggaca 37902358  T
Q  196 agtgtagtaatcgttacttcagaaagt 222  Q
    |||||||||||||||||||||||||||    
T  37902359 agtgtagtaatcgttacttcagaaagt 37902385  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 34383505 - 34383601
Alignment:
Q  4 tcttagagcataattataggtgcaaaagcaccgtggtataactgagccaaatgaaaatatgttagaaagcaactgatatttagcatgcaagcaagta 100  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||    
T  34383505 tcttagagtataattatcagtgcaaaagcaccgtggtataactgagccaaatgaaaatgtgtgagaaagcaattgatatttggcatgcaagcaagta 34383601  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 14662240 - 14662341
Alignment:
Q  121 tttttcaaattcgtccgccaggtgtaacatcaaatatgag-ttttttatgccaaaaatcatccaaggagttggacaagtgtagtaatcgttacttcagaa 219  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||| |||| |||  ||||||||| |||||||||||||||||||||||    
T  14662240 tttttcaagttcgtccgccaggtataacatcaaatatgagtttttttatg-caaaattcatgcaaatagttggacaggtgtagtaatcgttacttcagaa 14662338  T
Q  220 agt 222  Q
    |||    
T  14662339 agt 14662341  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 11425844 - 11425752
Alignment:
Q  8 agagcataattataggtgcaaaagcaccgtggtataactgagccaaatgaaaatatgttagaaagcaactgatatttagcatgcaagcaagta 100  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  11425844 agagcataattatcggtgcaaaagcaccgtggtataacttagccaaatgaaaatgtgtcagaaagcaactgatatttggcatgcaagcaagta 11425752  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 4165631 - 4165565
Alignment:
Q  101 agagcacctccagcggcttctttttcaaattcgtccgccag-gtgtaacatcaaatatgagtttttt 166  Q
    |||||||||||||||||| ||||||||  || ||| ||||| ||||||| |||||||||| ||||||    
T  4165631 agagcacctccagcggctcctttttcaggtttgtctgccagtgtgtaacttcaaatatgattttttt 4165565  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 5415535 - 5415443
Alignment:
Q  8 agagcataattataggtgcaaaagcaccgtggtataactgagccaaatgaaaatatgttagaaagcaactgatatttagcatgcaagcaagta 100  Q
    ||||||||||||| |||||||||  ||||||||||||||  ||||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  5415535 agagcataattatcggtgcaaaaataccgtggtataacttggccaaatgaaaatgtgtcagaaagcaactgatatttggcatgcaagcaagta 5415443  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 41317473 - 41317384
Alignment:
Q  112 agcggcttctttttcaaattcgtccgccaggtgtaacatcaaatatgagttttttatgccaaaaatcatccaaggagttggacaagtgta 201  Q
    ||||| ||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| || |||||    
T  41317473 agcggtttctttttcaagttcgtccaccaggtgtaatatcaaatatgagttttttaagccaaaaatcatgcaaggagttggccatgtgta 41317384  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 33387017 - 33386926
Alignment:
Q  8 agagcataattataggtgcaaaagcaccgtggtataactgagccaaatgaaaatatgttagaaagcaactgatatttagcatgcaagcaagt 99  Q
    |||||||||||||  ||||||||||||  |||||||||||||||| |||||||| ||| ||||||||||||||||||  |||| ||||||||    
T  33387017 agagcataattatcagtgcaaaagcacaatggtataactgagccacatgaaaatgtgtcagaaagcaactgatatttgacatgtaagcaagt 33386926  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 40635077 - 40634996
Alignment:
Q  99 taagagcacctccagcggcttctttttcaaattcgtccgccaggtgtaacatcaaatatgagttttttatgccaaaaatcat 180  Q
    ||||| |||||||||||| | | ||||||  |||||| ||||  |||||| ||||||||||||||||| |||||||| ||||    
T  40635077 taagaacacctccagcggttccattttcaggttcgtctgccaactgtaacttcaaatatgagttttttttgccaaaattcat 40634996  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 13338671 - 13338603
Alignment:
Q  99 taagagcacctccagcggcttctttttcaaattcgtccgccag-gtgtaacatcaaatatgagtttttt 166  Q
    |||||||||||||| ||||| |||||||| ||||||||||||| ||||||  ||| |||||| ||||||    
T  13338671 taagagcacctccaacggctcctttttcagattcgtccgccagtgtgtaatttcatatatgaatttttt 13338603  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 44396127 - 44396216
Alignment:
Q  8 agagcataattataggtgcaaaagcaccgtggtataactgagccaaatgaaaatatgttagaaagcaactgatatttagcatgcaagcaa 97  Q
    ||||||||||||| ||||||||| ||| |||||||||||  ||||||||||||| ||| ||||||||||||||||||  |||||||||||    
T  44396127 agagcataattatcggtgcaaaaacactgtggtataacttggccaaatgaaaatgtgtcagaaagcaactgatatttgacatgcaagcaa 44396216  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 2905741 - 2905619
Alignment:
Q  99 taagagcacctccagcggcttctttttcaaattcgtccgccaggtgtaacatcaaatatgagttttttatgccaaaaatcatccaaggagttggacaagt 198  Q
    |||||||||||||||||| | | ||||||  | ||||||| || |||||| |||| |||||||||||| |||||||| |||| || |||||  | ||  |    
T  2905741 taagagcacctccagcggttccattttcaggtccgtccgctagctgtaacttcaactatgagtttttt-tgccaaaattcatgcatggagtgcgccagct 2905643  T
Q  199 gtagtaatcgttacttcagaaagt 222  Q
    |||  |||||||||||||||||||    
T  2905642 gtaacaatcgttacttcagaaagt 2905619  T

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