View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20331_high_2 (Length: 332)
Name: NF20331_high_2
Description: NF20331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20331_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 943618 - 943921
Alignment:
| Q |
19 |
gtctcgagatctcttggtcaattggactaatccaacggccggcctatgaatggaaagactgcaaagaatccaaaatctgtgttgagatacagaaatcaaa |
118 |
Q |
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| T |
943618 |
gtctcgagatctcttggtcaattggactaatccaacggccggcctctgaatggaaagactgcaaagaatccaaaatctgtgtcgagatacagaaatcaaa |
943717 |
T |
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| Q |
119 |
taagtttacactttgcagttcatttgaaataattttgtggaatcggaacatataaatagagatgacattccaatgcataggcaagaaacagaaacataca |
218 |
Q |
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| T |
943718 |
taagtttacactttgcagttcatttgaaatagttttgtggaatcggaacatataaatagagatgacattccaatgcactggcaagaaacagaaacataca |
943817 |
T |
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| Q |
219 |
aagagttcggcaccttagatgctactgattcctcctacttatatctaatctactgaaacaaaatcagttcagtggctttgcacgagtcgatggatcttcc |
318 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
943818 |
aagagttcggcaccttagatgctactgattactcctacttatatctaatctactgaaacaaaatcagttcagtggctttgcacgagtcgatggatcttcc |
943917 |
T |
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| Q |
319 |
tttg |
322 |
Q |
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|||| |
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| T |
943918 |
tttg |
943921 |
T |
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