View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20331_low_3 (Length: 325)
Name: NF20331_low_3
Description: NF20331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20331_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 8480597 - 8480287
Alignment:
| Q |
1 |
tcagtactatggtgaaatatccattggtactcctcctcagacttttactgtgatttttgatactggtagctctaatacttgggtgccatcagttaaatgt |
100 |
Q |
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| T |
8480597 |
tcagtactatggtgaaatatccattggtactcctcctcagacttttactgtgattttcgatactggtagctctaatacttgggtgccatcagttaaatgt |
8480498 |
T |
|
| Q |
101 |
tacttctcggtgagttttgttttaatccatatgatgaatatgtatctggtttatatatttatttatattctgattttggctttgttaatgtgtttttgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8480497 |
tacttctcggtgagttttgttttaatccatatgatgaatatgtatctggtttatatatttatttatattctgattttggctttgttaatgtgtttttgca |
8480398 |
T |
|
| Q |
201 |
tgttggtgcagcttgcatgtttagtccatgctaagtacaagtctagccagtcaagtacctacaagccaaatggtttgtcttcttcttttgttttttgagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8480397 |
tgttggtgcagcttgcatgtttagtccatgctaagtacaagtctagccagtcaagtacctacaagccaaatggtttgtcttcttcttttgttttttgagg |
8480298 |
T |
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| Q |
301 |
atctgcctttg |
311 |
Q |
| |
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||||||||||| |
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| T |
8480297 |
atctgcctttg |
8480287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 55356789 - 55356718
Alignment:
| Q |
5 |
tactatggtgaaatatccattggtactcctcctcagacttttactgtgatttttgatactggtagctctaat |
76 |
Q |
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|||||||||||||||||||||||||| ||||||||| || ||||| ||||| |||||||| ||||||||| |
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| T |
55356789 |
tactatggtgaaatatccattggtacctctcctcagaagttcactgtcattttcgatactggcagctctaat |
55356718 |
T |
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