View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20331_low_4 (Length: 310)
Name: NF20331_low_4
Description: NF20331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20331_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 26695272 - 26694997
Alignment:
| Q |
20 |
caaagaaggctcttagtttgtgcatatcatgaagaatcatgttcatgagttaggagccattcaacaacttcactcatgttaggtctcatgtctttctctt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26695272 |
caaagaaggctcttagtttgtgcatatcatgaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctctt |
26695173 |
T |
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| Q |
120 |
cctcaacacacttcaaagcaaccattgtcaaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaaaattt |
219 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26695172 |
cctcaacacactttagagcaaccattgtcaaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagattt |
26695073 |
T |
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| Q |
220 |
catttctgataaattccttcttttctctctcacccatgttaccaaactctcattatgagtcttttctccgtctgtg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26695072 |
catttctgataaattccttcttttctctctcacccatgttaccaaactctcattatgagtcttttctccgtctgtg |
26694997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 26691111 - 26690836
Alignment:
| Q |
20 |
caaagaaggctcttagtttgtgcatatcatgaagaatcatgttcatgagttaggagccattcaacaacttcactcatgttaggtctcatgtctttctctt |
119 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26691111 |
caaagatggctcttagtttgtgcatatcatcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctctt |
26691012 |
T |
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| Q |
120 |
cctcaacacacttcaaagcaaccattgtcaaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaaaattt |
219 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26691011 |
cctcaacacactttagtgcaaccattgtcaaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagattt |
26690912 |
T |
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| Q |
220 |
catttctgataaattccttcttttctctctcacccatgttaccaaactctcattatgagtcttttctccgtctgtg |
295 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26690911 |
catttctaataatttccttcttttctctctcacccatgttaccaaactctcattatgagtcttttctccatctgtg |
26690836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 26732422 - 26732147
Alignment:
| Q |
20 |
caaagaaggctcttagtttgtgcatatcatgaagaatcatgttcatgagttaggagccattcaacaacttcactcatgttaggtctcatgtctttctctt |
119 |
Q |
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|
|||||| ||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26732422 |
caaagatggctcttagtttgtgcatatcatcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctctt |
26732323 |
T |
|
| Q |
120 |
cctcaacacacttcaaagcaaccattgtcaaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaaaattt |
219 |
Q |
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||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
26732322 |
cctcaacacactttagagcaaccattgtcaaagtctccgatttaaccatgtcataatttgatcccaatgtagggtctactatttgttcaaccaaagattt |
26732223 |
T |
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| Q |
220 |
catttctgataaattccttcttttctctctcacccatgttaccaaactctcattatgagtcttttctccgtctgtg |
295 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26732222 |
catttctaataatttccttcttttctctctcacccatgttaccaaactctcattatgagtcttttctccatctgtg |
26732147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 51 - 276
Target Start/End: Original strand, 26674998 - 26675223
Alignment:
| Q |
51 |
aagaatcatgttcatgagttaggagccattcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtcaa |
150 |
Q |
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|||||||||||| |||| || |||||| |||||||||| ||||||| | ||||| | |||||||||| ||| ||||| | |||||| |||| || ||| |
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| T |
26674998 |
aagaatcatgttgatgactttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgccaa |
26675097 |
T |
|
| Q |
151 |
agtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaaaatttcatttctgataaattccttcttttctctctc |
250 |
Q |
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|||| ||||| ||| |||||||||||| ||||||||| |||||| ||||||||||| | | || || || ||||||| ||||||||||||||| | |
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| T |
26675098 |
ggtcttcaattgaacaatgtcataatttaatcccaatgcagggtcaactatttgttcaatccaacatcccacttctgattctttccttcttttctcttta |
26675197 |
T |
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| Q |
251 |
acccatgttaccaaactctcattatg |
276 |
Q |
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| ||||||||| || ||||||||||| |
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| T |
26675198 |
atccatgttactaacctctcattatg |
26675223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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