View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20331_low_5 (Length: 302)
Name: NF20331_low_5
Description: NF20331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20331_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 8480585 - 8480868
Alignment:
| Q |
1 |
accatagtactgagcatccaagtaattcttcaatgcaacaacatcagcttctccagctcctccaaggatgtttttggaagcataattcctaatggaagac |
100 |
Q |
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| T |
8480585 |
accatagtactgagcatccaagtaattcttcaatgcaacaacatcagcttctccagctcctccaaggatgtttttggaagcataattcctaatggaagac |
8480684 |
T |
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| Q |
101 |
catgatgattcacaacccttcgaccccaacaagtttttgggttccaatttgttctttttcaaaccgatcctacgcaacccttcatttggtgcacaggaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8480685 |
catgatgattcacaacccttcgaccccaacaagtttttgggttccagtttgttctttttcaaaccgatcctacgcaacccttcatttggtgcacaggaaa |
8480784 |
T |
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| Q |
201 |
caagagaaaacaatagggtccacaaacacaaacataacaccaccacattcaacttgtttcccattttcacctgttcatccaaat |
284 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8480785 |
caagagaaaacaagagtgtccacaaacacaaacataacaccaccacattcaacttgtttcccattttcacctgttcatccaaat |
8480868 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 55356781 - 55356832
Alignment:
| Q |
1 |
accatagtactgagcatccaagtaattcttcaatgcaacaacatcagcttct |
52 |
Q |
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||||||||| |||||||| |||||||||||||| ||||||| ||||| |||| |
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| T |
55356781 |
accatagtattgagcatctaagtaattcttcaaagcaacaatatcagtttct |
55356832 |
T |
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