View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20331_low_7 (Length: 250)

Name: NF20331_low_7
Description: NF20331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20331_low_7
NF20331_low_7
[»] chr3 (5 HSPs)
chr3 (13-250)||(19482867-19483104)
chr3 (13-250)||(28085051-28085288)
chr3 (20-250)||(27350151-27350381)
chr3 (13-250)||(27388437-27388671)
chr3 (111-178)||(27980539-27980603)
[»] scaffold0043 (3 HSPs)
scaffold0043 (13-250)||(30485-30719)
scaffold0043 (13-250)||(45343-45577)
scaffold0043 (20-250)||(51307-51537)
[»] scaffold1163 (1 HSPs)
scaffold1163 (13-250)||(368-602)
[»] chr5 (2 HSPs)
chr5 (39-250)||(6163801-6164012)
chr5 (41-250)||(6164746-6164956)
[»] chr2 (1 HSPs)
chr2 (15-250)||(22394966-22395198)
[»] scaffold1142 (1 HSPs)
scaffold1142 (20-239)||(2071-2285)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 19483104 - 19482867
Alignment:
Q  13 aatatgatgatattggagactcccataaaactattggtgagttttatttttcttctttgtattttaaggtttcttctcccaccttgcgtttacttttata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19483104 aatatgatgatattggagactcccataaaactattggtgagttttatttttcttctttgtattttaaggtttcttctcccaccttgcgtttacttttata 19483005  T
Q  113 aattaaatgataatgctttcatgatggtaataagctgaatataaatgaataaatgatctcttgtagaaatggaagacattaacatactgatcgaggagga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19483004 aattaaatgataatgctttcatgatggtaataagctgaatataaatgaataaatgatctcttgtagaaatggaagacattaacatactgatcgaggagga 19482905  T
Q  213 cccaattcttgcacttgagaaacttctgactggagtgc 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19482904 cccaattcttgcacttgagaaacttctgactggagtgc 19482867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 28085051 - 28085288
Alignment:
Q  13 aatatgatgatattggagactcccataaaactattggtgagttttatttttcttctttgtattttaaggtttcttctcccaccttgcgtttacttttata 112  Q
    |||||| |||||||||||||||     ||| |||||||||||||||||||| ||||||  |||||||||||||| |||||||||||  |||| |||  ||    
T  28085051 aatatgttgatattggagactcttcggaaattattggtgagttttatttttattctttaaattttaaggtttctcctcccaccttgtttttagtttctta 28085150  T
Q  113 aattaaatgataatgctttcatgatggtaataagctgaatataaatgaataaatgatctcttgtagaaatggaagacattaacatactgatcgaggagga 212  Q
    |||||||| ||||| ||| |||||  ||||| |||||||||||| ||| |||||||| || ||||| ||||||||||||||||| |||||||||||||||    
T  28085151 aattaaattataatacttccatgagagtaatgagctgaatataagtgattaaatgatttcatgtagcaatggaagacattaacaaactgatcgaggagga 28085250  T
Q  213 cccaattcttgcacttgagaaacttctgactggagtgc 250  Q
    |||  |||||||| ||||||| ||||| ||||||||||    
T  28085251 cccgcttcttgcatttgagaagcttcttactggagtgc 28085288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 27350151 - 27350381
Alignment:
Q  20 tgatattggagactcccataaaactattggtgagttttatttttcttctttgtattttaaggtttcttctcccaccttgcgtttacttttataaattaaa 119  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||||||   ||| |||||||||| |||||||| |||  |||||||  |||| ||||    
T  27350151 tgatattggagactcccaggaaactattggtgagatttatttttcttcttaaaattataaggtttctcctcccaccatgccattactttcttaaactaaa 27350250  T
Q  120 tgataatgctttcatgatggtaataagctgaatataaatgaataaatgatctcttgtagaaatggaagacattaacatactgatcgaggaggacccaatt 219  Q
     |||| ||||| |||||   | ||||||||||||||| ||||||| | | ||||||||| |||||||||||| ||||  ||||||||||| |||||| ||    
T  27350251 cgatagtgcttccatgagatttataagctgaatataagtgaataagtaaactcttgtagcaatggaagacatcaacaagctgatcgaggaagacccactt 27350350  T
Q  220 cttgcacttgagaaacttctgactggagtgc 250  Q
     |||||||| |||| ||||| ||||||||||    
T  27350351 tttgcacttaagaagcttcttactggagtgc 27350381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 27388671 - 27388437
Alignment:
Q  13 aatatgatgatattggagactcccataaaactattggtgagttttatttttcttctttgtattttaaggtttcttctcccaccttgcgtttacttttata 112  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||  ||||  ||||||| | |||| ||||||||||| ||||| |||  ||    
T  27388671 aatatgttgatattggagactcccatgaaactattggtgagtttt-tttttc--ctttaaattttaatgcttctcctcccaccttgtgtttagtttctta 27388575  T
Q  113 aattaaatgataatgctttcatgatggtaataagctgaatataaatgaataaatgatctcttgtagaaatggaagacattaacatactgatcgaggagga 212  Q
    |||||||| ||||| ||| |||||  ||||| ||||||||| || ||| |||||||| |||||| | ||| || |||||| ||| ||||||| |||||||    
T  27388574 aattaaattataattcttccatgagagtaatgagctgaataaaagtgattaaatgatttcttgttgcaatagatgacattgacaaactgatcaaggagga 27388475  T
Q  213 cccaattcttgcacttgagaaacttctgactggagtgc 250  Q
    | || |||||||| ||||||   |||| ||||||||||    
T  27388474 ctcacttcttgcatttgagatgtttcttactggagtgc 27388437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 27980539 - 27980603
Alignment:
Q  111 taaattaaatgataatgctttcatgatggtaataagctgaatataaatgaataaatgatctcttgtag 178  Q
    |||| |||||||||||||||||||||    | |||||||||||||| | |||||||||||||||||||    
T  27980539 taaagtaaatgataatgctttcatga---gagtaagctgaatataattaaataaatgatctcttgtag 27980603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 30485 - 30719
Alignment:
Q  13 aatatgatgatattggagactcccataaaactattggtgagttttatttttcttctttgtattttaaggtttcttctcccaccttgcgtttacttttata 112  Q
    |||||| ||||||| ||||||||||  ||| |||||||||||||||||||||||   |  ||||||||| |||  ||||||||||  | |||||||  ||    
T  30485 aatatgttgatatttgagactcccaggaaagtattggtgagttttatttttctt---taaattttaaggattcccctcccaccttctgattactttctta 30581  T
Q  113 aattaaatgataatgctttcatgatggtaataagctgaatataaatgaataaatgatctcttgtagaaatggaagacattaacatactgatcgaggagga 212  Q
     ||||||  ||||||||| |||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |||||||| ||    
T  30582 cattaaagtataatgcttccatgagagtaataagctgaatataagtgaataaatgatctcttgtagaaatggaagacattaacaaattaatcgaggaaga 30681  T
Q  213 cccaattcttgcacttgagaaacttctgactggagtgc 250  Q
    |||| |||||||||||||||| ||||| ||||||||||    
T  30682 cccacttcttgcacttgagaagcttcttactggagtgc 30719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 45343 - 45577
Alignment:
Q  13 aatatgatgatattggagactcccataaaactattggtgagttttatttttcttctttgtattttaaggtttcttctcccaccttgcgtttacttttata 112  Q
    |||||| ||||||| ||||||||||  ||| |||||||||||||||||||||||   |  ||||||||| |||  ||||||||||  | |||||||  ||    
T  45343 aatatgttgatatttgagactcccaggaaagtattggtgagttttatttttctt---taaattttaaggattcccctcccaccttctgattactttctta 45439  T
Q  113 aattaaatgataatgctttcatgatggtaataagctgaatataaatgaataaatgatctcttgtagaaatggaagacattaacatactgatcgaggagga 212  Q
     ||||||  ||||||||| |||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |||||||| ||    
T  45440 cattaaagtataatgcttccatgagagtaataagctgaatataagtgaataaatgatctcttgtagaaatggaagacattaacaaattaatcgaggaaga 45539  T
Q  213 cccaattcttgcacttgagaaacttctgactggagtgc 250  Q
    |||| |||||||||||||||| ||||| ||||||||||    
T  45540 cccacttcttgcacttgagaagcttcttactggagtgc 45577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 51537 - 51307
Alignment:
Q  20 tgatattggagactcccataaaactattggtgagttttatttttcttctttgtattttaaggtttcttctcccaccttgcgtttacttttataaattaaa 119  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||||||   ||| |||||||||| |||||||| |||  |||||||  |||| ||||    
T  51537 tgatattggagactcccaggaaactattggtgagatttatttttcttcttaaaattataaggtttctcctcccaccatgccattactttcttaaactaaa 51438  T
Q  120 tgataatgctttcatgatggtaataagctgaatataaatgaataaatgatctcttgtagaaatggaagacattaacatactgatcgaggaggacccaatt 219  Q
     |||| ||||| |||||   | ||||||||||||||| ||||||||| | ||||||||| |||||||||||| ||||  ||||||||||| |||||| ||    
T  51437 cgatagtgcttccatgagatttataagctgaatataagtgaataaataaactcttgtagcaatggaagacatcaacaagctgatcgaggaagacccactt 51338  T
Q  220 cttgcacttgagaaacttctgactggagtgc 250  Q
     ||||||||||||| ||||| ||||||||||    
T  51337 tttgcacttgagaagcttcttactggagtgc 51307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 368 - 602
Alignment:
Q  13 aatatgatgatattggagactcccataaaactattggtgagttttatttttcttctttgtattttaaggtttcttctcccaccttgcgtttacttttata 112  Q
    |||||| ||||||||||||||||||| ||||| |||||||||||| || |||  ||||  ||||||| |||||| ||||||||||| ||||| |||  ||    
T  368 aatatgttgatattggagactcccatgaaacttttggtgagtttt-ttcttc--ctttaaattttaatgtttctcctcccaccttgtgtttagtttctta 464  T
Q  113 aattaaatgataatgctttcatgatggtaataagctgaatataaatgaataaatgatctcttgtagaaatggaagacattaacatactgatcgaggagga 212  Q
    |||||  | ||||| ||| |||||  ||||| |||||||||||| |||||||||||| |||||||| ||| ||||||||| ||| ||||||| |||||||    
T  465 aattattttataattcttccatgagagtaatgagctgaatataagtgaataaatgatttcttgtagcaatagaagacattgacaaactgatcaaggagga 564  T
Q  213 cccaattcttgcacttgagaaacttctgactggagtgc 250  Q
    | || |||||||| ||||||   |||| ||||||||||    
T  565 ctcacttcttgcatttgagatgtttcttactggagtgc 602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 6163801 - 6164012
Alignment:
Q  39 aaaactattggtgagttttatttttcttctttgtattttaaggtttcttctcccaccttgcgtttacttttataaattaaatgataatgctttcatgatg 138  Q
    ||||||||| |||||||||||||||||||| |  |||||||||||||| ||||||| ||||||||| |||  ||| |||||| ||||| ||| |||||      
T  6163801 aaaactatttgtgagttttatttttcttctctaaattttaaggtttctcctcccactttgcgtttagtttcttaacttaaattataattcttccatgaca 6163900  T
Q  139 gtaataagctgaatataaatgaataaatgatctcttgtagaaatggaagacattaacatactgatcgaggaggacccaattcttgcacttgagaaacttc 238  Q
    ||||||||  || ||||| ||||||||||||   |||||| ||||||||| ||||||| || ||| ||| |||||||| |||||||| ||||||  ||||    
T  6163901 gtaataagaagattataagtgaataaatgattgtttgtagtaatggaagatattaacaaacagattgagaaggacccacttcttgcatttgagacgcttc 6164000  T
Q  239 tgactggagtgc 250  Q
    | ||||||||||    
T  6164001 ttactggagtgc 6164012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 250
Target Start/End: Complemental strand, 6164956 - 6164746
Alignment:
Q  41 aactattggtgagttttattttt-cttctttgtattttaaggtttcttctcccaccttgcgtttacttttataaattaaatgataatgctttcatgatgg 139  Q
    |||||||||| |||||||||||| ||||| |  |||||||||||||| ||||||| ||| ||||| |||  ||| |||||| |||||  ||  ||||  |    
T  6164956 aactattggtaagttttattttttcttctctaaattttaaggtttctcctcccactttgtgtttagtttcttaacttaaatcataattattctatgagag 6164857  T
Q  140 taataagctgaatataaatgaataaatgatctcttgtagaaatggaagacattaacatactgatcgaggaggacccaattcttgcacttgagaaacttct 239  Q
    |||||||  || ||||| |||||| |||||   |||||| ||||||||||||||||| ||  || ||||||||| |  |||||||| ||||||  |||||    
T  6164856 taataagaagattataagtgaatagatgattgtttgtagcaatggaagacattaacaaacatattgaggaggactcgcttcttgcatttgagacgcttct 6164757  T
Q  240 gactggagtgc 250  Q
     ||||||||||    
T  6164756 tactggagtgc 6164746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 22394966 - 22395198
Alignment:
Q  15 tatgatgatattggagactcccataaaactattggtgagttttatttttcttctttgtattttaaggtttcttctcccaccttgcgtttacttttataaa 114  Q
    |||| |||||||||||||||| || ||||| |||||||||||| ||||||  ||||  ||||||| |||||| ||||||||||| ||||| |||  ||||    
T  22394966 tatgttgatattggagactcctatgaaacttttggtgagtttt-tttttc--ctttaaattttaatgtttctcctcccaccttgtgtttagtttcttaaa 22395062  T
Q  115 ttaaatgataatgctttcatgatggtaataagctgaatataaatgaataaatgatctcttgtagaaatggaagacattaacatactgatcgaggaggacc 214  Q
    ||| || ||||| ||| |||||  ||||| |||||||||| | |||||||||||| || ||||| ||| ||||||||| ||| || |||| |||||||      
T  22395063 ttatattataattcttccatgagagtaatgagctgaatatgagtgaataaatgatttcatgtagcaatagaagacattgacaaacagatcaaggaggatt 22395162  T
Q  215 caattcttgcacttgagaaacttctgactggagtgc 250  Q
    || |||||||| ||||||   |||| ||||||||||    
T  22395163 cacttcttgcatttgagacgtttcttactggagtgc 22395198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 2071 - 2285
Alignment:
Q  20 tgatattggagactcccataaaactattggtgagttttatttttcttctttgtattttaaggtttcttctcccaccttgcgtttacttttataaattaaa 119  Q
    |||||||||||||||    |||||||| ||| |||||| | |||||||||   |||||||||||||| |||| |||||| ||||| |||  ||||    |    
T  2071 tgatattggagactcttggaaaactatcggtcagttttttctttcttcttcaaattttaaggtttctcctccaaccttgtgtttagtttcttaaa----a 2166  T
Q  120 tgataatgctttcatgatggtaataagctgaatataaatgaa--taaatgatctcttgtagaaatggaagacattaacatactgatcgaggaggacccaa 217  Q
    |||||||||| ||||||    | |||| | | ||||| ||||  ||||||| |||||||||  ||||||||||||||||  |||||||| || ||||||     
T  2167 tgataatgctatcatgag---attaaggtcagtataagtgaaaataaatgaactcttgtagccatggaagacattaacaagctgatcgaagaagacccac 2263  T
Q  218 ttcttgcacttgagaaacttct 239  Q
    || ||||| |||| || |||||    
T  2264 tttttgcatttgaaaagcttct 2285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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