View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20331_low_8 (Length: 249)
Name: NF20331_low_8
Description: NF20331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20331_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 8415241 - 8415472
Alignment:
| Q |
7 |
caccagatgagtaatttccacccatatttgcaatgcatatcaaccaaacaagtgttgcacatcaaactcttcaacctgcgcataagaaagaatcaattat |
106 |
Q |
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| T |
8415241 |
caccaaatgagcaatttccacc-atatttgcaatgcatatcaaccaaacaagtgttgcacatcatactcttcaacctgcgcataagaaagaatcaattat |
8415339 |
T |
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| Q |
107 |
tacattccttgcaaccttgctctttctattgcacattttctgaaacagtttctcaaaccagcaacccttcttgtgttttgaggaaaagaagcaggaaact |
206 |
Q |
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| T |
8415340 |
tacattccttgcaaccttgctctttctatcgcacattttctgaaacagtttctcaaaccagcaacccttcttgtgtgttgaggaaaagaagcaggaaact |
8415439 |
T |
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| Q |
207 |
gaaccacaaaaatagagaccaaacaattctctg |
239 |
Q |
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| T |
8415440 |
gaaccacaaaaatagagaccaaacaattctctg |
8415472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 8361793 - 8361851
Alignment:
| Q |
14 |
tgagtaatttccacccatatttgcaatgcatatcaaccaaacaagtgttgcacatcaaa |
72 |
Q |
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| T |
8361793 |
tgagcaatttccacccatatctgcaatgcatatcaaccaaacaagtgttgcacatcaaa |
8361851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 8406002 - 8406084
Alignment:
| Q |
155 |
tttctcaaaccagcaacccttcttgtgttttgaggaaaagaagcaggaaactgaaccacaaaaatagagaccaaacaattctct |
238 |
Q |
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| T |
8406002 |
tttctcaactcagcaacccttcttgtttgttgaggagaacaagcacgaaactgaaccacaaaaat-gagaccaaaaacttctct |
8406084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 8361878 - 8361957
Alignment:
| Q |
75 |
cttcaacctgcgcataagaaagaatcaattattacattccttgcaaccttgctctttctattgcacattttctgaaacagt |
155 |
Q |
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| T |
8361878 |
cttcaacctgcgcttaagaaagaatcaatcattacattcgatg-agacttgcactttctatcacacatttcctgaaacagt |
8361957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 8411606 - 8411653
Alignment:
| Q |
65 |
acatcaaactcttcaacctgcgcataagaaagaatcaattattacatt |
112 |
Q |
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| T |
8411606 |
acatcatattcttcaacctgcgcataagaaagaatcaaacattacatt |
8411653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 8451676 - 8451737
Alignment:
| Q |
72 |
actcttcaacctgcgcataagaaagaatcaattattacattccttgcaaccttgctctttct |
133 |
Q |
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| T |
8451676 |
actctccaacatgtgcataagaaagaagcaatgattacattccatgaaaccttgctccttct |
8451737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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