View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20332_low_1 (Length: 373)

Name: NF20332_low_1
Description: NF20332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20332_low_1
NF20332_low_1
[»] chr8 (1 HSPs)
chr8 (59-373)||(29051460-29051775)
[»] chr5 (2 HSPs)
chr5 (265-322)||(42142868-42142925)
chr5 (99-140)||(23127184-23127225)
[»] chr3 (3 HSPs)
chr3 (59-137)||(43790665-43790743)
chr3 (99-142)||(46786686-46786729)
chr3 (99-144)||(9107058-9107103)
[»] chr7 (2 HSPs)
chr7 (69-138)||(27746614-27746683)
chr7 (99-144)||(48669666-48669711)
[»] chr1 (3 HSPs)
chr1 (73-138)||(7230413-7230478)
chr1 (99-141)||(34454163-34454205)
chr1 (99-144)||(27664119-27664164)
[»] chr4 (1 HSPs)
chr4 (69-144)||(41668852-41668927)
[»] chr2 (2 HSPs)
chr2 (59-142)||(14902266-14902349)
chr2 (59-144)||(24026715-24026800)
[»] chr6 (1 HSPs)
chr6 (99-131)||(7271853-7271885)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 59 - 373
Target Start/End: Complemental strand, 29051775 - 29051460
Alignment:
Q  59 atcaaacttaatgtttatatatgtttattaatcagaacttaaattgtagattcgccctatgccacc-aaaatcttagaaacggccctctatcttgctaat 157  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||  | | | ||||||||||||||||||||||||||||||| |    
T  29051775 atcaaacttaatgtttatatatatttattaatcagaatttaaattgtagattcgtcttagactatcgaaaatcttagaaacggccctctatcttgctact 29051676  T
Q  158 atgttgttgtcattttctgcaataagatatccttcacatattacgattatattaaaagtacaaataatgactacacctatcgattatattaaaagtataa 257  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29051675 atgttattgtcattttctgcaataagatatccttcacatattacgattatattaaaagtataaataatgactacacctatcgattatattaaaagtataa 29051576  T
Q  258 ataatgactgcacctatatttgttttgatttttcaaaactcattttggaattcaaaatgatttgaaagcatataaccgttattgcatttttctttttaca 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29051575 ataatgactgcacctatatttgttttgatttttcaaaactcattttggaattcaaaatgatttgaaatcatataaccgttattgcatttttctttttaca 29051476  T
Q  358 tcatatataattcaaa 373  Q
    ||||||||||||||||    
T  29051475 tcatatataattcaaa 29051460  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 42142868 - 42142925
Alignment:
Q  265 ctgcacctatatttgttttgatttttcaaaactcattttggaattcaaaatgatttga 322  Q
    |||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  42142868 ctgcacttatatttgttttgatttttcaaaactccttttggcattcaaaatgatttga 42142925  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 23127225 - 23127184
Alignment:
Q  99 aaattgtagattcgccctatgccaccaaaatcttagaaacgg 140  Q
    ||||||||||||||||||  ||||||||||||| ||||||||    
T  23127225 aaattgtagattcgcccttggccaccaaaatctcagaaacgg 23127184  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 43790665 - 43790743
Alignment:
Q  59 atcaaacttaatgtttatatatgtttattaatcagaacttaaattgtagattcgccctatgccaccaaaatcttagaaa 137  Q
    |||||| || |||||||||||| ||||||| | || ||  ||||||||  ||||||||| |||||||||||||||||||    
T  43790665 atcaaatttgatgtttatatatatttattagttaggacccaaattgtaagttcgccctaggccaccaaaatcttagaaa 43790743  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 46786729 - 46786686
Alignment:
Q  99 aaattgtagattcgccctatgccaccaaaatcttagaaacggcc 142  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||    
T  46786729 aaattgtaggttcgccctaggccaccaaaatctcagaaacggcc 46786686  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 9107103 - 9107058
Alignment:
Q  99 aaattgtagattcgccctatgccaccaaaatcttagaaacggccct 144  Q
    |||| |||| ||||||||| |||||||||| |||||||||||||||    
T  9107103 aaatggtaggttcgccctaggccaccaaaaacttagaaacggccct 9107058  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 27746683 - 27746614
Alignment:
Q  69 atgtttatatatgtttattaatcagaacttaaattgtagattcgccctatgccaccaaaatcttagaaac 138  Q
    |||||||||||| ||||||| | || ||| ||||| ||||||| ||||| ||||||||||||| ||||||    
T  27746683 atgtttatatatatttattagttagcactcaaattatagattcaccctaggccaccaaaatctcagaaac 27746614  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 48669666 - 48669711
Alignment:
Q  99 aaattgtagattcgccctatgccaccaaaatcttagaaacggccct 144  Q
    ||||||||| |||||| || ||||||||||||||| ||||||||||    
T  48669666 aaattgtaggttcgccttaggccaccaaaatcttataaacggccct 48669711  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 7230413 - 7230478
Alignment:
Q  73 ttatatatgtttattaatcagaacttaaattgtagattcgccctatgccaccaaaatcttagaaac 138  Q
    |||||||| ||||||| | |||| | ||||||||| |||| ||||| |||||||||||||||||||    
T  7230413 ttatatatatttattagttagaattcaaattgtaggttcgtcctataccaccaaaatcttagaaac 7230478  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 34454163 - 34454205
Alignment:
Q  99 aaattgtagattcgccctatgccaccaaaatcttagaaacggc 141  Q
    ||||||||| ||||||||| ||||||||||||| |||||||||    
T  34454163 aaattgtaggttcgccctaggccaccaaaatctcagaaacggc 34454205  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 27664119 - 27664164
Alignment:
Q  99 aaattgtagattcgccctatgccaccaaaatcttagaaacggccct 144  Q
    ||||||||| ||| ||||| ||||||||||||| ||||||||||||    
T  27664119 aaattgtaggttctccctaggccaccaaaatctcagaaacggccct 27664164  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 41668927 - 41668852
Alignment:
Q  69 atgtttatatatgtttattaatcagaacttaaattgtagattcgccctatgccaccaaaatcttagaaacggccct 144  Q
    |||||||||||| ||||||| | || ||  ||||| ||| ||||||||| ||||||||||||| ||||| ||||||    
T  41668927 atgtttatatatatttattagttaggacccaaattataggttcgccctaggccaccaaaatctcagaaaaggccct 41668852  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 14902349 - 14902266
Alignment:
Q  59 atcaaacttaatgtttatatatgtttattaatcagaacttaaattgtagattcgccctatgccaccaaaatcttagaaacggcc 142  Q
    |||||| || |||||||||||| ||||||| | || ||  ||||||||  |||||| ||  |||||||||||||||||||||||    
T  14902349 atcaaatttgatgtttatatatatttattagttaggacccaaattgtatgttcgccatagaccaccaaaatcttagaaacggcc 14902266  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 24026715 - 24026800
Alignment:
Q  59 atcaaacttaatgtttatatatgtttattaatcagaacttaaattgtagattcgccctatgccaccaaaatcttagaaacggccct 144  Q
    |||||| ||||||||||||||| ||||||| | |  |  |||||||||| |||||||||  |||||||||||| | || |||||||    
T  24026715 atcaaatttaatgtttatatatatttattagttaagatctaaattgtaggttcgccctagaccaccaaaatctcaaaatcggccct 24026800  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 7271853 - 7271885
Alignment:
Q  99 aaattgtagattcgccctatgccaccaaaatct 131  Q
    |||||||||||||| ||||||||||||||||||    
T  7271853 aaattgtagattcgtcctatgccaccaaaatct 7271885  T

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