View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20333_high_3 (Length: 425)
Name: NF20333_high_3
Description: NF20333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20333_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 43 - 410
Target Start/End: Complemental strand, 31076112 - 31075744
Alignment:
| Q |
43 |
tattattttgtcaatgctgtccttgtgtctgcatttgtgccaattgcttgtttatgtagctaagtaacatccacgatgtgtcttttgatcggatcaatcc |
142 |
Q |
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| T |
31076112 |
tattattttgtcaatgctgtccttgtgtctgcatttgtgccaattgcttgtttatgtagctaagtaacatccacgatgtgtcttttgattggatcaatcc |
31076013 |
T |
|
| Q |
143 |
aattacctacaccaaaagactatggcaatctatagagttgtctggttaggtaataaaatcactcacaattactttaacaaaacaatacatacttttttcc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31076012 |
aattacctacaccaaaagactatggcaatctatagagttgtctggttaggtaataaaatcactcacaattactttaacaaaacaatacatacttttttcc |
31075913 |
T |
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| Q |
243 |
caaactatcaataactcactctaattctatagaatatcctaaaataaaagga-aaaagactctataaaacactaaaacacatgatatatgtagagtcatc |
341 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31075912 |
caaactatcaataactcactctaatcctatagaatatcctaaaataaaaggaaaaaagactctataaaacactaaaacacatgatatatgtcgagtcatc |
31075813 |
T |
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| Q |
342 |
aataaatacttctaacactattttagagagcttatggaaacagttcatgacatatttataggttgtttc |
410 |
Q |
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| T |
31075812 |
aataaatacttctaacactattttagagagcttatggaaacagttcatgacatatttataggttgtttc |
31075744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31076170 - 31076126
Alignment:
| Q |
1 |
agtgtctgacgtgacaccgacgtatgtggttacattcaattatat |
45 |
Q |
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| T |
31076170 |
agtgtctgacgtaacaccgacgtatatggttacattcaattatat |
31076126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 14078970 - 14078883
Alignment:
| Q |
238 |
tttcccaaactatcaataactcactctaattc-tatagaatatcctaaaataaaaggaaaaagactctataaaacactaaaacacatg |
324 |
Q |
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||||||||||||||| ||||||||||||| || | ||||| ||||||||||||| | ||||||||| |||| |||||||| ||||| |
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| T |
14078970 |
tttcccaaactatcagtaactcactctaaatcttctagaaaatcctaaaataaacgataaaagactcgataagtcactaaaatacatg |
14078883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 24579266 - 24579219
Alignment:
| Q |
278 |
atcctaaaataaaagg-aaaaagactctataaaacactaaaacacatg |
324 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
24579266 |
atcctaaaataaaagacaaaaagactctataaaacactaaaatacatg |
24579219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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