View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20333_high_9 (Length: 208)
Name: NF20333_high_9
Description: NF20333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20333_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 11995456 - 11995617
Alignment:
| Q |
17 |
aaatttatgtcttttagtttccatagtgttttaatgcaagattattttcttaatttaatattattatatttgtaatcatatagaaaaattcttcaacttt |
116 |
Q |
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| T |
11995456 |
aaatttatgtcttttagtttccatagtgttttaatgcaagattattttcttaatttaatattattatatttgtaatcatatagaaaaattcttcaacttt |
11995555 |
T |
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| Q |
117 |
taatgtgctgcctaagttttatgtataattttcgaacatttatcatgtctcttattaacattctgttgttgccta |
191 |
Q |
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| T |
11995556 |
taatgtgctgcctaagttttatgt-------------atttatcatgtctcttgttaacattctgttgttgccta |
11995617 |
T |
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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 24590260 - 24590359
Alignment:
| Q |
19 |
atttatgtcttttagtttccatagtgttttaatgcaagattattttcttaatttaatattattatatttgtaatcatata---gaaaaattcttcaactt |
115 |
Q |
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| T |
24590260 |
atttatgtctttcattttccaaagt-ttttaatgcaa-attattttcttaatttaatattgttatatttgtaatcatatagtggaaaaattcttcaactt |
24590357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 32928932 - 32929002
Alignment:
| Q |
28 |
ttttagtttccatagtgttttaatgcaagattattttcttaatttaatattattatatttgtaatcatata |
98 |
Q |
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| T |
32928932 |
ttttattttccgtagtgtcttaatgcaatattgttttcttaatttgatattattatatatataatcatata |
32929002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 20979854 - 20979894
Alignment:
| Q |
50 |
atgcaagattattttcttaatttaatattattatatttgtaa |
91 |
Q |
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| T |
20979854 |
atgcaagattattt-cttaatttaaaattattatatttgtaa |
20979894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 41364199 - 41364244
Alignment:
| Q |
27 |
cttttagtttccatagtgttttaatgcaagattattttcttaattt |
72 |
Q |
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| T |
41364199 |
cttttattttccgtagtgttttattgcaagattattttcttaattt |
41364244 |
T |
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