View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20333_low_2 (Length: 525)

Name: NF20333_low_2
Description: NF20333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20333_low_2
NF20333_low_2
[»] chr6 (18 HSPs)
chr6 (11-506)||(2601615-2602110)
chr6 (100-293)||(2574302-2574495)
chr6 (71-293)||(2617741-2617961)
chr6 (109-293)||(2583956-2584140)
chr6 (66-298)||(2678851-2679081)
chr6 (109-293)||(2646491-2646675)
chr6 (109-292)||(2431231-2431414)
chr6 (110-293)||(2447306-2447489)
chr6 (427-506)||(6820967-6821046)
chr6 (380-463)||(19294279-19294362)
chr6 (372-478)||(33235021-33235127)
chr6 (372-460)||(56894-56982)
chr6 (372-463)||(34011336-34011427)
chr6 (388-463)||(34013439-34013514)
chr6 (388-463)||(17539919-17539994)
chr6 (389-463)||(14494624-14494698)
chr6 (413-478)||(6812415-6812480)
chr6 (372-444)||(1255869-1255941)
[»] chr1 (4 HSPs)
chr1 (376-506)||(16426322-16426452)
chr1 (376-460)||(32740740-32740824)
chr1 (441-504)||(3387610-3387673)
chr1 (372-468)||(50127494-50127590)
[»] chr7 (12 HSPs)
chr7 (110-292)||(17874976-17875158)
chr7 (411-493)||(9730062-9730144)
chr7 (371-463)||(27616210-27616302)
chr7 (372-463)||(43837406-43837497)
chr7 (389-463)||(5741583-5741657)
chr7 (390-463)||(11812686-11812759)
chr7 (417-463)||(11820706-11820752)
chr7 (450-504)||(27993866-27993920)
chr7 (372-422)||(45216141-45216191)
chr7 (411-463)||(11809455-11809507)
chr7 (403-455)||(11814584-11814636)
chr7 (434-474)||(48598252-48598292)
[»] chr2 (10 HSPs)
chr2 (389-506)||(41848922-41849039)
chr2 (372-506)||(38783752-38783886)
chr2 (372-463)||(32201008-32201099)
chr2 (388-506)||(17651161-17651279)
chr2 (372-463)||(9929517-9929608)
chr2 (401-463)||(18724896-18724959)
chr2 (403-463)||(27003952-27004012)
chr2 (388-463)||(34409767-34409843)
chr2 (411-498)||(16661327-16661414)
chr2 (389-438)||(4748269-4748318)
[»] scaffold1723 (1 HSPs)
scaffold1723 (427-506)||(479-557)
[»] chr4 (4 HSPs)
chr4 (411-506)||(32593718-32593813)
chr4 (372-463)||(54305542-54305633)
chr4 (376-463)||(55680627-55680714)
chr4 (372-437)||(658632-658697)
[»] chr3 (3 HSPs)
chr3 (374-463)||(43922128-43922217)
chr3 (372-463)||(26565197-26565288)
chr3 (390-463)||(21409045-21409118)
[»] scaffold0325 (1 HSPs)
scaffold0325 (396-499)||(12788-12891)
[»] chr8 (8 HSPs)
chr8 (372-463)||(15850641-15850732)
chr8 (392-506)||(28867194-28867308)
chr8 (447-506)||(13097405-13097464)
chr8 (382-488)||(3159736-3159842)
chr8 (372-506)||(27401709-27401843)
chr8 (392-506)||(28869758-28869871)
chr8 (441-504)||(18393695-18393758)
chr8 (388-463)||(18603242-18603317)
[»] chr5 (2 HSPs)
chr5 (435-506)||(4111966-4112037)
chr5 (388-478)||(41815782-41815871)
[»] scaffold0012 (1 HSPs)
scaffold0012 (446-506)||(209151-209211)


Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 506
Target Start/End: Original strand, 2601615 - 2602110
Alignment:
Q  11 cagagacttaaaaatagccttggtcagataatagaccaaactcgggcctacatagaaataaaaattgatatagagtaaaatgaatttatattttggggta 110  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2601615 cagacacttaaaaatagtcttggtcagataatagaccaaactcgggcctatatagaaataaaaattgatatagagtaaaatgaatttatattttggggta 2601714  T
Q  111 ccttttcgctaataacatcttgaattactaggctatcattggagacactggtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttc 210  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2601715 ccttttcgctaataacatcttgaattaccaggctatcattggagacactggtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttc 2601814  T
Q  211 ttgtcttagaaccgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctgtagtttatcatatgcaa 310  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2601815 ttgtcttaaaactgcttttaagtacctaactctcattcttgcagcttgtctttcatctgttcttgtccaacaataaccctctgtagtttatcatatgcaa 2601914  T
Q  311 agaatagaccatcaatttagtcggtaaagtgttactttctctccaataccatgaagtacatacacctgacacgacagtgacacggacacatcgacactgt 410  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||    
T  2601915 agagcagaccatcaatttagtcggtaaagtgttactttctctccaataccatgaagtacagacacctgacacgacagttacacggacacgtcgacactgt 2602014  T
Q  411 taatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatct 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  2602015 taatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttataaaagatctaaattaagaatcaaaatacaaacatatgcatct 2602110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 100 - 293
Target Start/End: Original strand, 2574302 - 2574495
Alignment:
Q  100 attttggggtaccttttcgctaataacatcttgaattactaggctatcattggagacactggtgatgacttctgatgtgcttgtaacatgcaaatcaaag 199  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2574302 attttgtggtaccttttcgctaataacatcttgaattacgaggctatcattggagacactggtgatgacttctgatgtgcttgtaatatgcaaatcaaag 2574401  T
Q  200 tatgctacttcttgtcttagaaccgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg 293  Q
    || ||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2574402 taagctacatcttgtcttagaattgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg 2574495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 71 - 293
Target Start/End: Complemental strand, 2617961 - 2617741
Alignment:
Q  71 aaaattgatatagagtaaaatgaatttatattttggggtaccttttcgctaataacatcttgaattactaggctatcattggagacactggtgatgactt 170  Q
    |||||||||||| |||||||| |||||  |||||    ||||||||| |||| ||||||||||||||||||| | || || |||||||| ||||||||||    
T  2617961 aaaattgatataaagtaaaataaattttaattttta--taccttttcactaagaacatcttgaattactaggatgtcgtttgagacacttgtgatgactt 2617864  T
Q  171 ctgatgtgcttgtaacatgcaaatcaaagtatgctacttcttgtcttagaaccgcttttaagtacctaactctcattcttgcagcttgtctttcacctgt 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2617863 ctgatgtgcttgtaacatgcaaatcaaagtatgctacttcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgt 2617764  T
Q  271 tcttgtccaacaataaccctctg 293  Q
    |||||||||||||||||||||||    
T  2617763 tcttgtccaacaataaccctctg 2617741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 109 - 293
Target Start/End: Complemental strand, 2584140 - 2583956
Alignment:
Q  109 taccttttcgctaataacatcttgaattactaggctatcattggagacactggtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctact 208  Q
    ||||||||| |||| ||||||||||||||||||| | || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2584140 taccttttcactaagaacatcttgaattactaggatgtcgttagagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctact 2584041  T
Q  209 tcttgtcttagaaccgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg 293  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2584040 tcttgtcttagaactgcttttaagtacctagctctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg 2583956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 66 - 298
Target Start/End: Original strand, 2678851 - 2679081
Alignment:
Q  66 aaataaaaattgatatagagtaaaatgaatttatattttggggtaccttttcgctaataacatcttgaattactaggctatcattggagacactggtgat 165  Q
    ||||||||||||||||| |||||||  ||||| ||||||    ||||||||| |||| |||||||||||| |||||||| || || |||||||| |||||    
T  2678851 aaataaaaattgatataaagtaaaacaaattt-tatttttta-taccttttcactaagaacatcttgaatcactaggctgtcgttagagacacttgtgat 2678948  T
Q  166 gacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttcttgtcttagaaccgcttttaagtacctaactctcattcttgcagcttgtctttca 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  2678949 gacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttcttgtcttagaactgcttttaagtatctagctctcattcttgcagcttgtctttca 2679048  T
Q  266 cctgttcttgtccaacaataaccctctgtagtt 298  Q
    |||||||||||||||||||||||||||| ||||    
T  2679049 cctgttcttgtccaacaataaccctctgaagtt 2679081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 109 - 293
Target Start/End: Original strand, 2646491 - 2646675
Alignment:
Q  109 taccttttcgctaataacatcttgaattactaggctatcattggagacactggtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctact 208  Q
    ||||||||| |||| ||| ||||||||||| || || || || |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  2646491 taccttttcactaagaacgtcttgaattaccagactgtcgttagagacactggtgatgacttctgatgtgcttgtaatatgcaaatcaaagtatgatact 2646590  T
Q  209 tcttgtcttagaaccgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg 293  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2646591 tcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg 2646675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 2431414 - 2431231
Alignment:
Q  109 taccttttcgctaataacatcttgaattactaggctatcattggagacactggtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctact 208  Q
    |||||| || |||| ||||||||||||||||||||| ||| | || |||||||||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  2431414 taccttgtcactaagaacatcttgaattactaggctgtcactagatacactggtgatgacatctgttgtgcttgtaacatgcaaatcaaagtatgatact 2431315  T
Q  209 tcttgtcttagaaccgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctct 292  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2431314 tcttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaatagccctct 2431231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 110 - 293
Target Start/End: Complemental strand, 2447489 - 2447306
Alignment:
Q  110 accttttcgctaataacatcttgaattactaggctatcattggagacactggtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctactt 209  Q
    |||||||| ||||  ||||||||||||| |||||| ||| | |||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||||    
T  2447489 accttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctactt 2447390  T
Q  210 cttgtcttagaaccgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctctg 293  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2447389 cttgtcttagaactgcttttaagtacctaactctcattcttgcagcttgtctctcacctgttcttgtccaacaataaccctctg 2447306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 506
Target Start/End: Original strand, 6820967 - 6821046
Alignment:
Q  427 ggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatct 506  Q
    ||||||||||| | |||| |||||||||||||| ||| |||| ||||||||| ||| |||||||| | ||||||||||||    
T  6820967 ggacaccgacatcgctacttatatattaatttacttataaaaaatctaaatttagaatcaaaatatatacatatgcatct 6821046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 19294279 - 19294362
Alignment:
Q  380 cacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||||| ||||||| |||||||||||| | ||||||||||||  | ||||||||| ||| |||| ||||| ||||||||||||    
T  19294279 cacgacactgacacgaacacatcgacaccgctaatgtaaaaaatataggacaccgataccgctacatatatgttaatttattta 19294362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 372 - 478
Target Start/End: Complemental strand, 33235127 - 33235021
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 471  Q
    |||||||| |||||| ||| |  ||||| ||||||  ||||||||||||| ||| |||||||||||    ||||||| |||||||||||||| |||| ||    
T  33235127 acacctgatacgacattgatagagacacgtcgacatcgttaatgtaaaaagcctaggacaccgacattgttacctatgtattaatttatttataaaatat 33235028  T
Q  472 ctaaatt 478  Q
    |||||||    
T  33235027 ctaaatt 33235021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 460
Target Start/End: Original strand, 56894 - 56982
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttat 460  Q
    ||||||||||||||| ||| |||||||||||||||| | |||| |||||||  | ||||||  ||||| |||| ||||| |||||||||    
T  56894 acacctgacacgacattgatacggacacatcgacaccgctaatataaaaaatataggacacgaacaccgctacatatatgttaatttat 56982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 463
Target Start/End: Complemental strand, 34011427 - 34011336
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    |||| |||||| ||| |||||||||||| ||||| | | ||||||||||||  | |||||||||||||  ||| ||||| ||||||||||||    
T  34011427 acacgtgacacaacactgacacggacacgtcgacgccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttattta 34011336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 463
Target Start/End: Original strand, 34013439 - 34013514
Alignment:
Q  388 tgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    |||||||||||| ||||||| | ||||||||||||  | |||||||||||||  ||| ||||| ||||||||||||    
T  34013439 tgacacggacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttattta 34013514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 463
Target Start/End: Original strand, 17539919 - 17539994
Alignment:
Q  388 tgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    |||||||||||  ||||||| ||||||||||||||  |  ||||||||||||  ||| ||||| ||||||||||||    
T  17539919 tgacacggacatgtcgacaccgttaatgtaaaaaatataagacaccgacaccattacatatatgttaatttattta 17539994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 463
Target Start/End: Complemental strand, 14494698 - 14494624
Alignment:
Q  389 gacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||||||||| ||||||| | |||||||||| |    ||||||||||||| |||| ||||| ||||||||||||    
T  14494698 gacacggacacgtcgacaccgctaatgtaaaatatacaggacaccgacaccgctacatatatgttaatttattta 14494624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 478
Target Start/End: Original strand, 6812415 - 6812480
Alignment:
Q  413 atgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaatt 478  Q
    ||||||||||  | ||||||| ||| | ||||||||||||||||||| ||| |||| |||||||||    
T  6812415 atgtaaaaaaaatgggacaccaacatcgctacctatatattaatttacttataaaaaatctaaatt 6812480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 444
Target Start/End: Complemental strand, 1255941 - 1255869
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctac 444  Q
    |||||||| |||| | |||||| || || |||||||||||| |||||||||  | ||||||||||||| ||||    
T  1255941 acacctgatacgatactgacacagatacttcgacactgttagtgtaaaaaatatgggacaccgacaccgctac 1255869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 506
Target Start/End: Original strand, 16426322 - 16426452
Alignment:
Q  376 ctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaa 475  Q
    ||||||| ||| |||||||||||| || |||| ||||||||||||| | | |||||| |||||| ||||||||||||||||||||||| ||||||| |||    
T  16426322 ctgacacaacactgacacggacacgtcaacaccgttaatgtaaaaagcataggacactgacaccgctacctatatattaatttatttataaaagatataa 16426421  T
Q  476 attaagagtcaaaatacaaacatatgcatct 506  Q
    ||||||| |||||||||| ||||||||||||    
T  16426422 attaagaatcaaaatacatacatatgcatct 16426452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 460
Target Start/End: Original strand, 32740740 - 32740824
Alignment:
Q  376 ctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttat 460  Q
    ||||||||||| |||||||| || ||||||||| |||||||||||||  | |||||| |||||| |||| ||||| |||||||||    
T  32740740 ctgacacgacactgacacggtcatatcgacactattaatgtaaaaaatataggacactgacaccactacatatatgttaatttat 32740824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 3387610 - 3387673
Alignment:
Q  441 ctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcat 504  Q
    |||| |||||||||||||||||| |||| ||||||||| ||| |||||||||| ||||||||||    
T  3387610 ctacttatatattaatttatttataaaatatctaaattgagaatcaaaatacatacatatgcat 3387673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 468
Target Start/End: Complemental strand, 50127590 - 50127494
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaa 468  Q
    ||||||||||||| | | |  ||||||| |||| |||| ||||||||||||| | ||||| || |||| ||| ||||||||||||||||||| ||||    
T  50127590 acacctgacacgatactaatccggacacgtcgatactgctaatgtaaaaaacataggacatcgccaccgctatctatatattaatttatttataaaa 50127494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 110 - 292
Target Start/End: Original strand, 17874976 - 17875158
Alignment:
Q  110 accttttcgctaataacatcttgaattactaggctatcattggagacactggtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctactt 209  Q
    ||||| || |||| ||||||||||||||| |   | ||||| |||||||| ||||||| |||||| ||||||||||| ||||||||||| || || ||||    
T  17874976 accttctcactaagaacatcttgaattacaatagtgtcattagagacactagtgatgatttctgaggtgcttgtaacctgcaaatcaaaataagcaactt 17875075  T
Q  210 cttgtcttagaaccgcttttaagtacctaactctcattcttgcagcttgtctttcacctgttcttgtccaacaataaccctct 292  Q
    |||| || || || |||||||||||| |   |||||||||||||||||||||| ||| ||| |||||||||||||| ||||||    
T  17875076 cttgcctaagtactgcttttaagtacttgtatctcattcttgcagcttgtcttccacttgtccttgtccaacaatatccctct 17875158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 493
Target Start/End: Complemental strand, 9730144 - 9730062
Alignment:
Q  411 taatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaataca 493  Q
    ||||||||||||  | | |||| |||||| ||||||||||||||||||||||| ||||||||||||||||||  |||||||||    
T  9730144 taatgtaaaaaatatagaacactgacaccgctacctatatattaatttatttataaaagatctaaattaagaaccaaaataca 9730062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 463
Target Start/End: Original strand, 27616210 - 27616302
Alignment:
Q  371 tacacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    |||||||||||||| | |||||||||||  ||||||| ||||||||||||||    ||||||||||||| |||| | ||| ||||||||||||    
T  27616210 tacacctgacacgatactgacacggacatgtcgacaccgttaatgtaaaaaatacaggacaccgacaccgctacatgtatgttaatttattta 27616302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 463
Target Start/End: Complemental strand, 43837497 - 43837406
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    |||||| |||| ||| |||||||||||| ||||||||| |||||||||||||   |||||  |||||| ||||  |||||||||||||||||    
T  43837497 acaccttacacaacactgacacggacacctcgacactgctaatgtaaaaaactcaggacattgacaccactacacatatattaatttattta 43837406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 463
Target Start/End: Original strand, 5741583 - 5741657
Alignment:
Q  389 gacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||| |||||||| |||||||||||||||||||| | | ||||||||||| ||||  ||||||||||| |||||    
T  5741583 gacactgacacatcaacactgttaatgtaaaaaacttagaacaccgacaccgctacacatatattaattaattta 5741657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 463
Target Start/End: Complemental strand, 11812759 - 11812686
Alignment:
Q  390 acacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    |||| ||||| | ||||| | ||||||||||||| | ||||||||||||  |||||||||||||||||||||||    
T  11812759 acacagacacgttgacaccgctaatgtaaaaaacataggacaccgacacagctacctatatattaatttattta 11812686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 463
Target Start/End: Complemental strand, 11820752 - 11820706
Alignment:
Q  417 aaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||||| | ||||||||||||| |||||||||||||||||||||||    
T  11820752 aaaaaacataggacaccgacaccactacctatatattaatttattta 11820706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 27993866 - 27993920
Alignment:
Q  450 tattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcat 504  Q
    |||||||||||||| ||||||| |||| ||||| |||||||||| ||||||||||    
T  27993866 tattaatttatttataaaagatataaactaagaatcaaaatacatacatatgcat 27993920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 45216191 - 45216141
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaa 422  Q
    ||||||||||||||| |||||||||||| ||||||| | ||||||||||||    
T  45216191 acacctgacacgacactgacacggacacgtcgacaccgctaatgtaaaaaa 45216141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 463
Target Start/End: Complemental strand, 11809507 - 11809455
Alignment:
Q  411 taatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||||||||| | |  |||||||||||  |||||||||||||||||||||||    
T  11809507 taatgtaaaaatcataagacaccgacactgctacctatatattaatttattta 11809455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 11814636 - 11814584
Alignment:
Q  403 gacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaa 455  Q
    ||||| ||||||||||||||| | ||||||||||||   ||||||||||||||    
T  11814636 gacaccgttaatgtaaaaaacataggacaccgacactgttacctatatattaa 11814584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 474
Target Start/End: Original strand, 48598252 - 48598292
Alignment:
Q  434 gacacctctacctatatattaatttatttacaaaagatcta 474  Q
    |||||| ||| ||||||||||||||||||| ||||||||||    
T  48598252 gacaccactatctatatattaatttatttataaaagatcta 48598292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 389 - 506
Target Start/End: Original strand, 41848922 - 41849039
Alignment:
Q  389 gacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaa 488  Q
    ||||| ||||||||||||| | ||||||||||||  | ||||||||||||| ||| ||||||||||||||||||| |||| ||||||||| ||| |||||    
T  41848922 gacactgacacatcgacaccgctaatgtaaaaaatataggacaccgacaccgctatctatatattaatttatttataaaatatctaaattgagaatcaaa 41849021  T
Q  489 atacaaacatatgcatct 506  Q
    ||||| ||||||| ||||    
T  41849022 atacatacatatgaatct 41849039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 372 - 506
Target Start/End: Complemental strand, 38783886 - 38783752
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 471  Q
    ||||||||||||| | ||||||||||||||||||| || ||||||||||  |   |||||||||| |  ||| ||||||||||||||||||| |||| ||    
T  38783886 acacctgacacgatactgacacggacacatcgacattgctaatgtaaaagtcagaggacaccgacgctgctatctatatattaatttatttataaaatat 38783787  T
Q  472 ctaaattaagagtcaaaatacaaacatatgcatct 506  Q
    || |||| ||| |||||||||| |||||| |||||    
T  38783786 ctgaattgagaatcaaaatacatacatatacatct 38783752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 372 - 463
Target Start/End: Complemental strand, 32201099 - 32201008
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||||||||||||| |||||||||||| ||||||| | ||||||||||||  | |||||||||||||  ||  ||||| ||||||||||||    
T  32201099 acacctgacacgacactgacacggacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccattaaatatatgttaatttattta 32201008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 506
Target Start/End: Original strand, 17651161 - 17651279
Alignment:
Q  388 tgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaa 487  Q
    ||||||| |||| ||||||  | |||| |||||||| | ||| || |||||| ||  ||||||||||||||||||| | |||||||||||||| |  |||    
T  17651161 tgacacgaacacgtcgacatcgctaatataaaaaacataggatactgacaccgctggctatatattaatttatttatataagatctaaattaaaaaccaa 17651260  T
Q  488 aatacaaacatatgcatct 506  Q
    |||||| ||||||||||||    
T  17651261 aatacatacatatgcatct 17651279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 463
Target Start/End: Original strand, 9929517 - 9929608
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    |||| |||||||||| |||||||||||| ||||||| | ||||||||||||  | ||||||| ||||  |||| ||||| ||||||||||||    
T  9929517 acacttgacacgacactgacacggacacgtcgacaccgctaatgtaaaaaatataggacaccaacactgctacatatatgttaatttattta 9929608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 463
Target Start/End: Complemental strand, 18724959 - 18724896
Alignment:
Q  401 tcgacactgttaatgtaaaaaacc-tcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||||| | |||||||||||||| | ||||||||||||| |||||||||||||||||||||||    
T  18724959 tcgacaccgataatgtaaaaaaccataggacaccgacaccgctacctatatattaatttattta 18724896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 463
Target Start/End: Original strand, 27003952 - 27004012
Alignment:
Q  403 gacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||||||||||||||||||  | ||||||||||||| |||| ||||| ||||||||||||    
T  27003952 gacactgttaatgtaaaaaatataggacaccgacaccgctacgtatatgttaatttattta 27004012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 463
Target Start/End: Complemental strand, 34409843 - 34409767
Alignment:
Q  388 tgacacggacacatcgacactgttaatgtaa-aaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    |||||||||||||||||||| | |||||||| |||| || |||||||||||||  ||  ||||||||||||||||||    
T  34409843 tgacacggacacatcgacaccgctaatgtaaaaaaatctaggacaccgacaccattagatatatattaatttattta 34409767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 498
Target Start/End: Complemental strand, 16661414 - 16661327
Alignment:
Q  411 taatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacat 498  Q
    |||||||| |||| | ||||||||| ||| |||| |||||||||||| || || |||||||||||||| ||| ||| |||||| ||||    
T  16661414 taatgtaataaacattggacaccgataccgctacatatatattaattcatgtataaaagatctaaattgagaatcagaatacatacat 16661327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 4748318 - 4748269
Alignment:
Q  389 gacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacac 438  Q
    ||||||||||||||||||| | ||||||||||||  | ||||||||||||    
T  4748318 gacacggacacatcgacaccgctaatgtaaaaaatataggacaccgacac 4748269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 427 - 506
Target Start/End: Complemental strand, 557 - 479
Alignment:
Q  427 ggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatct 506  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||| |||||||||| | ||||||||||    
T  557 ggacaccgacaccgctatctatatattaatttatttataaaagatcttaattaagaatcaaaatacata-atatgcatct 479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 411 - 506
Target Start/End: Original strand, 32593718 - 32593813
Alignment:
Q  411 taatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatct 506  Q
    ||||||||||| | | |||||| |||||| |||||| |||| ||||||||||| ||| ||||||||||| || |||||||||| ||||||||||||    
T  32593718 taatgtaaaaaccataggacactgacaccgctacctgtatactaatttatttataaatgatctaaattatgaatcaaaatacacacatatgcatct 32593813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 463
Target Start/End: Original strand, 54305542 - 54305633
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||||||||| ||| |||||||||||| ||||||  | |||||||||||   | ||||||||||||| |||| ||||| ||||||||||||    
T  54305542 acacctgacacaacactgacacggacacgtcgacatcgctaatgtaaaaattataggacaccgacaccgctacatatatgttaatttattta 54305633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 463
Target Start/End: Original strand, 55680627 - 55680714
Alignment:
Q  376 ctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||||||||| ||| |||||||| ||||||| | ||||||||||||  | |||||||||||||  ||| ||||| ||||||||||||    
T  55680627 ctgacacgacactgatacggacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttattta 55680714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 658697 - 658632
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgaca 437  Q
    ||||| ||||||||| ||||||||| || || |||||| |||||||||||| || |||||||||||    
T  658697 acacccgacacgacactgacacggatacgtcaacactgctaatgtaaaaaatctaggacaccgaca 658632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 463
Target Start/End: Complemental strand, 43922217 - 43922128
Alignment:
Q  374 acctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||||||||||| |||||||||||| ||||||| | || |||||||||  | |||||||||||||||||| || || ||||||||||||    
T  43922217 acctgacacgacactgacacggacacttcgacaccgctagtgtaaaaaatataggacaccgacacctctacatacatgttaatttattta 43922128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 463
Target Start/End: Original strand, 26565197 - 26565288
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||||||||||||| |||||||||||| ||||||| | ||||||||||||    |||||| ||||||  ||| ||||| ||||||||||||    
T  26565197 acacctgacacgacactgacacggacacttcgacaccgctaatgtaaaaaatacaggacactgacaccgttacatatatgttaatttattta 26565288  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 463
Target Start/End: Complemental strand, 21409118 - 21409045
Alignment:
Q  390 acacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    |||| ||||||| ||||| ||||||||||||||  | ||| || |||||| |||| ||||| ||||||||||||    
T  21409118 acacagacacattgacaccgttaatgtaaaaaatataggatactgacaccgctacatatatgttaatttattta 21409045  T

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Target: scaffold0325 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 396 - 499
Target Start/End: Original strand, 12788 - 12891
Alignment:
Q  396 acacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaa 495  Q
    ||||| |||||||| ||||||||||||    ||||||||||||| |||| |||||||||||||||||||| |||  ||||| | | | ||||||||||||    
T  12788 acacaccgacactgctaatgtaaaaaatacaggacaccgacaccgctacatatatattaatttatttacagaaggcctaaaatgaaaatcaaaatacaaa 12887  T
Q  496 cata 499  Q
    ||||    
T  12888 cata 12891  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 372 - 463
Target Start/End: Complemental strand, 15850732 - 15850641
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    ||||||||||||||| ||| | |||||| |||||||||||| |||||||||  | |||||||||||||  ||  ||||||||||||||||||    
T  15850732 acacctgacacgacactgatatggacacttcgacactgttagtgtaaaaaatataggacaccgacaccattatgtatatattaatttattta 15850641  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 506
Target Start/End: Original strand, 28867194 - 28867308
Alignment:
Q  392 acggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaata 491  Q
    ||||||||||||||||   ||||||| ||||| |  |||||| ||||  ||| ||||||||||||||||||| |||| || |||||| ||| ||||||||    
T  28867194 acggacacatcgacacaactaatgtataaaacataagacaccaacactactatctatatattaatttatttataaaacatttaaattgagaatcaaaata 28867293  T
Q  492 caaacatatgcatct 506  Q
    || | ||||||||||    
T  28867294 catatatatgcatct 28867308  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 506
Target Start/End: Original strand, 13097405 - 13097464
Alignment:
Q  447 atatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatct 506  Q
    ||||||||||||||||| |||| ||||||||| ||| |||||||||| ||||||||||||    
T  13097405 atatattaatttatttataaaatatctaaattgagaatcaaaatacatacatatgcatct 13097464  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 382 - 488
Target Start/End: Original strand, 3159736 - 3159842
Alignment:
Q  382 cgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaag 481  Q
    ||||| |||||| ||||| |  |||| | ||||||||||||| | ||||||||||||  |||||| |||| |||||||||||  ||||||||||||| ||    
T  3159736 cgacactgacactgacacgttaacaccgctaatgtaaaaaacataggacaccgacactgctacctgtatactaatttatttatgaaagatctaaattgag 3159835  T
Q  482 agtcaaa 488  Q
    | |||||    
T  3159836 aatcaaa 3159842  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 372 - 506
Target Start/End: Original strand, 27401709 - 27401843
Alignment:
Q  372 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 471  Q
    |||||||| | |||| ||||||||||||  | |||| | ||||||||||||| | |||| || | ||| ||| ||||||||||||||||||| ||||  |    
T  27401709 acacctgataggacactgacacggacacgccaacaccgctaatgtaaaaaacataggacgccaataccgctatctatatattaatttatttataaaatgt 27401808  T
Q  472 ctaaattaagagtcaaaatacaaacatatgcatct 506  Q
    || |||| ||| |||||||| | |||| |||||||    
T  27401809 ctcaattgagaatcaaaatatatacatctgcatct 27401843  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 506
Target Start/End: Original strand, 28869758 - 28869871
Alignment:
Q  392 acggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaata 491  Q
    |||||||||||||||| | ||| ||||||| | |  |||||  ||||  ||| ||||||||||||||||||| |||| || |||||| ||| ||||||||    
T  28869758 acggacacatcgacacagctaacgtaaaaa-cataagacacaaacactactatctatatattaatttatttataaaatatttaaattgagaatcaaaata 28869856  T
Q  492 caaacatatgcatct 506  Q
    || ||||||||||||    
T  28869857 catacatatgcatct 28869871  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 504
Target Start/End: Complemental strand, 18393758 - 18393695
Alignment:
Q  441 ctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcat 504  Q
    |||| |||||||||||||| ||| |||| ||||||||| ||| ||| |||||| ||||||||||    
T  18393758 ctacttatatattaatttacttataaaatatctaaattgagaatcataatacatacatatgcat 18393695  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 463
Target Start/End: Complemental strand, 18603317 - 18603242
Alignment:
Q  388 tgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 463  Q
    |||||| ||||| ||||||| |||| |||||||||  | |||||||| ||||||||| || || ||||||||||||    
T  18603317 tgacacagacacttcgacaccgttagtgtaaaaaatataggacaccggcacctctacatacatgttaatttattta 18603242  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 435 - 506
Target Start/End: Original strand, 4111966 - 4112037
Alignment:
Q  435 acacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatct 506  Q
    ||||| |||| ||||||||||||||| || |||||||||||||| ||| |||||||||| ||||||||||||    
T  4111966 acaccgctacttatatattaatttatatataaaagatctaaattgagaatcaaaatacatacatatgcatct 4112037  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 388 - 478
Target Start/End: Complemental strand, 41815871 - 41815782
Alignment:
Q  388 tgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaatt 478  Q
    |||||||||||  | ||||| | ||||||||||||  | ||||||||||||| |||| |||||||||||||||||| |||||||| |||||    
T  41815871 tgacacggacaattagacaccgctaatgtaaaaaaa-taggacaccgacaccgctacatatatattaatttatttataaaagatccaaatt 41815782  T

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Target: scaffold0012 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 446 - 506
Target Start/End: Original strand, 209151 - 209211
Alignment:
Q  446 tatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatct 506  Q
    |||||||||||||||||| |||| ||||||||| ||| |||||||||| ||||||||||||    
T  209151 tatatattaatttatttataaaatatctaaattgagaatcaaaatacatacatatgcatct 209211  T

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