View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20333_low_3 (Length: 508)
Name: NF20333_low_3
Description: NF20333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20333_low_3 |
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| [»] scaffold0795 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 31033573 - 31033087
Alignment:
| Q |
1 |
gttcatttttgtcgtatgatgttaaaatattgggctgatctttcaaggtataaagagtatgcatgtcacatagaaatggacgtcttttcaggtacatggg |
100 |
Q |
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| T |
31033573 |
gttcatttttgtcatatgatgttaaaatattgggctgatctttcaagatataaagagtatg----tcacatagaaatggacgtcttttcaggtacatggg |
31033478 |
T |
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| Q |
101 |
tggagtggttatgtgttgaaagagaaatttaaactgataagggatgtctgaagagttggcatcaaagccatacccaaaacatagaaggaagaattcggtt |
200 |
Q |
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| T |
31033477 |
tggagtggttatgtgttgaaagagaaatttaaactgataagggatgtctgaagagttggcatcaaaaccatacccaaaacttagaaggtagaattcggtt |
31033378 |
T |
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| Q |
201 |
ggttaaagattgtatgtctttcttggatattaaannnnnnntgcaaatgattcaagcggaggagatggaagagcttcattctttatcaacagatgaaaca |
300 |
Q |
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| T |
31033377 |
ggttaaagatcgtatgtctttcttggatattaaaggggaggtgcaaatgattcaagcggatgagatggaagagtttcattctttatcagcagatgaaaca |
31033278 |
T |
|
| Q |
301 |
actttattcaaattgcattcaggtattcagtcgcaaaaaacttagaatagattggttaaaggaagttgatgtcaattctaaattttttccatggggtgat |
400 |
Q |
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| T |
31033277 |
actttattcaaattgcattcaggtattcagtcgcaaaaaacttagaatagattggttaaaggaagttgatgtcaattctaaa-tttttccacgggatgat |
31033179 |
T |
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| Q |
401 |
gtcctctcggagaaggtcgaatgtgattatctctaataatgttaatggtgttcagatcgagggtgtggaaggggtgaggaacgcaatgtttc |
492 |
Q |
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| T |
31033178 |
gtcctctcagagaaggttgaatgcgattatctctaataatgttaatggtgttcatatcgagggtgtggaaggggtgaggaacacaatatttc |
31033087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0795 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0795
Description:
Target: scaffold0795; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 352 - 492
Target Start/End: Original strand, 5023 - 5162
Alignment:
| Q |
352 |
ttggttaaaggaagttgatgtcaattctaaattttttccatggggtgatgtcctctcggagaaggtcgaatgtgattatctctaataatgttaatggtgt |
451 |
Q |
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| T |
5023 |
ttgggtaaaggagggtgatgccaattctaaatttta-ccacggggtgatgtcctctaggagaaggttgaacgtgattatctcgattaatgttaatggtgt |
5121 |
T |
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| Q |
452 |
tcagatcgagggtgtggaaggggtgaggaacgcaatgtttc |
492 |
Q |
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| T |
5122 |
tcagattgagggtttggaaggggtgaggaatgcagtgtttc |
5162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 475
Target Start/End: Complemental strand, 30760544 - 30760458
Alignment:
| Q |
389 |
ccatggggtgatgtcctctcggagaaggtcgaatgtgattatctctaataatgttaatggtgttcagatcgagggtgtggaaggggt |
475 |
Q |
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| T |
30760544 |
ccatggagtgatgtcttttcggagaaggtcaaatgtcattatttctattaatgtaaatggtgttcaggtagagggtgtggaaggggt |
30760458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 480
Target Start/End: Complemental strand, 13535092 - 13534994
Alignment:
| Q |
383 |
ttttttccatggggtgatgtcctctcggagaagg-tcgaatgtgattatctctaataatgttaatggtgttcagatcgagggtgtggaaggggtgagga |
480 |
Q |
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| T |
13535092 |
ttttttccatggggtggtgtcttctaggagacgggtcaactgtgattatttctattaatgttaaaggtgttcagattaagggtgtggaaggggcgagga |
13534994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 476
Target Start/End: Complemental strand, 30758384 - 30758317
Alignment:
| Q |
409 |
ggagaaggtcgaatgtgattatctctaataatgttaatggtgttcagatcgagggtgtggaaggggtg |
476 |
Q |
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| T |
30758384 |
ggagaaggtcaaatgtcattatttctattaatgtaaatggtgttcaggtagagggtgtggaaggggtg |
30758317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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