View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20333_low_5 (Length: 345)
Name: NF20333_low_5
Description: NF20333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20333_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 65 - 329
Target Start/End: Original strand, 24915691 - 24915934
Alignment:
| Q |
65 |
actgcttgtgcatgtttatttgtatgtcgcttgtgaattgtgactgcttgtgcaagtttacgtgtgtgctgcttgtgcattgagatcataaaatattttc |
164 |
Q |
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| T |
24915691 |
actgcttgtgcatgtttatttgtgtgtcgcttgtgaattgtgactgcttgtgcaagtttacgtgtgtgctgcttgtgcattgagatcataaaatattttc |
24915790 |
T |
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| Q |
165 |
tcttcactaattaaacaactgctttgttgttagaatagactacctaaatcaatgtttgaagataacaatgatttgtaacaagaggcttttgtttccgaaa |
264 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
24915791 |
tcttcactaattaaacaactactttgttgttagaatagactacctaaatcaatgtttgaagataacaatgatatgt---------------------aaa |
24915869 |
T |
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| Q |
265 |
gggtcactgagaacatgtcatttggtcaattctagtagccgcatcagtattttttaccaagttta |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24915870 |
gggtcactgagaacatgtcatttggtcaattctagtagccgcatcagtattttttacctagttta |
24915934 |
T |
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