View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20333_low_6 (Length: 319)

Name: NF20333_low_6
Description: NF20333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20333_low_6
NF20333_low_6
[»] chr2 (3 HSPs)
chr2 (19-306)||(38895693-38895981)
chr2 (238-287)||(5435487-5435536)
chr2 (182-306)||(42898300-42898424)
[»] chr4 (2 HSPs)
chr4 (181-303)||(30518147-30518269)
chr4 (197-306)||(22085521-22085630)
[»] chr1 (8 HSPs)
chr1 (197-306)||(42287119-42287228)
chr1 (200-306)||(31644076-31644182)
chr1 (182-306)||(12804511-12804635)
chr1 (182-306)||(28496106-28496230)
chr1 (181-306)||(50788818-50788943)
chr1 (182-306)||(36989342-36989466)
chr1 (181-270)||(12774975-12775064)
chr1 (180-306)||(4160379-4160505)
[»] chr5 (1 HSPs)
chr5 (238-306)||(1983178-1983246)
[»] chr7 (2 HSPs)
chr7 (182-306)||(44150800-44150924)
chr7 (181-270)||(40749428-40749517)
[»] chr8 (2 HSPs)
chr8 (181-306)||(5788722-5788847)
chr8 (200-306)||(33186737-33186843)
[»] chr3 (2 HSPs)
chr3 (238-286)||(12106124-12106172)
chr3 (238-286)||(46987775-46987823)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 38895693 - 38895981
Alignment:
Q  19 attagtagctaataacttttgtcgtttaagatagctgcaaaaaggtaatcaaacttgcttctttcaagttctttttagggctgcactaatcta-gacaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  38895693 attagtagctaataacttttgtcgtttaagatagctgcaaaaaggtaatcaaacttgcttctttcaagttctttttagtgctgcactaatctaagacaag 38895792  T
Q  118 atacaactttgacataaannnnnnnagtatgacatatctaagaattaagaaaacataaattacttaccttgaaaagatagtgccacaatcacatttgtat 217  Q
     |||||||||||||||||       |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38895793 ttacaactttgacataaatttttttagtatgacatatctaagaattaagaaaagataaattacttaccttgaaaagatagtgccacaatcacatttgtat 38895892  T
Q  218 tctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacatttccacttcttctc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38895893 tctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacacttccacttcttctc 38895981  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 5435487 - 5435536
Alignment:
Q  238 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttct 287  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5435487 tgagtgtgctttccaatccgattgaacaacataaaattttgagcacttct 5435536  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 306
Target Start/End: Complemental strand, 42898424 - 42898300
Alignment:
Q  182 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 281  Q
    |||||||| ||||  || ||||| |||||| |||||||||| || ||||| || || ||||| |||||||| || |||||||| |||||    || ||||    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc 42898325  T
Q  282 acttctcacatttccacttcttctc 306  Q
    |||| ||||||||||||||||||||    
T  42898324 acttgtcacatttccacttcttctc 42898300  T

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Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 303
Target Start/End: Original strand, 30518147 - 30518269
Alignment:
Q  181 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgag 280  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||||||||||  |||||||    
T  30518147 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 30518246  T
Q  281 cacttctcacatttccacttctt 303  Q
    ||||||||||| |||||||||||    
T  30518247 cacttctcacacttccacttctt 30518269  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 22085521 - 22085630
Alignment:
Q  197 gtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacatttcc 296  Q
    |||||||||||||||||||| |||||||| |||||| ||||    || ||||||||||| |||||||| |||||    || || ||||| ||||| ||||    
T  22085521 gtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttcc 22085620  T
Q  297 acttcttctc 306  Q
    ||||||||||    
T  22085621 acttcttctc 22085630  T

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Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 197 - 306
Target Start/End: Complemental strand, 42287228 - 42287119
Alignment:
Q  197 gtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacatttcc 296  Q
    ||||||||||||||| | ||||||||||||||||||||||| || ||||||||||| || ||||||||||||||    |||||||| || ||||||||||    
T  42287228 gtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagcatttttcacatttcc 42287129  T
Q  297 acttcttctc 306  Q
    ||||||||||    
T  42287128 acttcttctc 42287119  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 31644076 - 31644182
Alignment:
Q  200 ccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacatttccact 299  Q
    |||||||||||||| ||||||| ||||||||| || || ||||| ||||||||||| || ||||||||||| |  ||||||||||| ||||||||||| |    
T  31644076 ccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagcacttatcacatttccatt 31644175  T
Q  300 tcttctc 306  Q
    | |||||    
T  31644176 ttttctc 31644182  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 306
Target Start/End: Original strand, 12804511 - 12804635
Alignment:
Q  182 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 281  Q
    |||||||| |||| ||||||||| |||||| | || || ||||||||||||||||| || || ||||||||||| ||||||||||||||    || || |    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  282 acttctcacatttccacttcttctc 306  Q
    |||| |||||||||||||| |||||    
T  12804611 acttttcacatttccactttttctc 12804635  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 306
Target Start/End: Original strand, 28496106 - 28496230
Alignment:
Q  182 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 281  Q
    |||||||| ||||  |||||||| ||||||||||||||||| |||||||| || ||||  || ||||||||||| ||||| || |||||   ||| || |    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  282 acttctcacatttccacttcttctc 306  Q
    | || ||||||||||||||||||||    
T  28496206 atttttcacatttccacttcttctc 28496230  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 306
Target Start/End: Original strand, 50788818 - 50788943
Alignment:
Q  181 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgag 280  Q
    |||||| || |||| ||||||||| |||||  | |||||||| || ||||||||||| || ||||| |||||||| ||||||||||||||    || |||    
T  50788818 ttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagag 50788917  T
Q  281 cacttctcacatttccacttcttctc 306  Q
    ||||| ||||| ||||| ||||||||    
T  50788918 cacttatcacacttccatttcttctc 50788943  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 306
Target Start/End: Complemental strand, 36989466 - 36989342
Alignment:
Q  182 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 281  Q
    ||||| |||||||| || ||||| |||||||||||||| || ||||||||  | || || || ||||||||||| ||||||||||||||    || || |    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  282 acttctcacatttccacttcttctc 306  Q
    |||| |||||||||||||| |||||    
T  36989366 acttatcacatttccactttttctc 36989342  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 12775064 - 12774975
Alignment:
Q  181 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcata 270  Q
    |||||| || |||| ||||||||| |||||| | || ||  ||||||||||||| || || || ||||||||||| ||||||||||||||    
T  12775064 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcata 12774975  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 306
Target Start/End: Complemental strand, 4160505 - 4160379
Alignment:
Q  180 cttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttga 279  Q
    |||||||||| ||||  || ||||| ||||| || || ||| |||| |||||| | || || || |||||||||||||| ||||| |||||   ||| ||    
T  4160505 cttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttaga 4160406  T
Q  280 gcacttctcacatttccacttcttctc 306  Q
     || |||||||| ||||||||||||||    
T  4160405 acatttctcacacttccacttcttctc 4160379  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 1983246 - 1983178
Alignment:
Q  238 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacatttccacttcttctc 306  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  1983246 tgagtgtgctttccaatccgattgaacaacataaaattttgagcacttctcacacttccacttcttctc 1983178  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 306
Target Start/End: Original strand, 44150800 - 44150924
Alignment:
Q  182 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 281  Q
    ||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||   ||| || |||||||| ||||||||||||||   ||| ||||    
T  44150800 tacctagaaaatatggttccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagc 44150899  T
Q  282 acttctcacatttccacttcttctc 306  Q
    |||| ||||||||||| ||||||||    
T  44150900 acttgtcacatttccatttcttctc 44150924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 40749517 - 40749428
Alignment:
Q  181 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcata 270  Q
    ||||||||| ||||  || ||||||||||| || |||||||||||||||||||| || | ||| ||||||||||| ||||| || |||||    
T  40749517 ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcata 40749428  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 306
Target Start/End: Original strand, 5788722 - 5788847
Alignment:
Q  181 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgag 280  Q
    ||||||||| ||||  || ||||| |||||| | ||||||||||| |||||||| || || || ||||||||||| ||||||||||||||    |||||     
T  5788722 ttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaa 5788821  T
Q  281 cacttctcacatttccacttcttctc 306  Q
    ||||| ||||||||||||||||||||    
T  5788822 cacttttcacatttccacttcttctc 5788847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 33186843 - 33186737
Alignment:
Q  200 ccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacatttccact 299  Q
    |||||||||||||| || ||||||| |||||||   || ||||| ||||||||||| ||||||||||||||    || || || ||||||||||||||||    
T  33186843 ccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccact 33186744  T
Q  300 tcttctc 306  Q
    | |||||    
T  33186743 ttttctc 33186737  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 12106172 - 12106124
Alignment:
Q  238 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12106172 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttc 12106124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 46987775 - 46987823
Alignment:
Q  238 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46987775 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttc 46987823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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