View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20333_low_9 (Length: 229)
Name: NF20333_low_9
Description: NF20333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20333_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 49350289 - 49350484
Alignment:
| Q |
14 |
tagcataggtagaatacttcctccaaggttaaaacacacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattg |
113 |
Q |
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| T |
49350289 |
tagcataggtagaatacttcctccaatgttaaaacacacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattg |
49350388 |
T |
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| Q |
114 |
gttctttaagtgcctcagcttctccatcctttatggttcatgaaggatgttgggttgattttgtaaatggtcatttggattttctatgcggcctaa |
209 |
Q |
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| T |
49350389 |
gttctttaagtgcctcagcttctgcatcctttatggttcatgaaggatgttgggttgattttgtaaatggtcatttggattttctatgcggcctaa |
49350484 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 36663734 - 36663822
Alignment:
| Q |
50 |
cacaagtatctgattgaactaaagatgagtgaatttgggatgtaatctttgtcctttgacattggttctttaagtgcctcagcttctccatccttt |
145 |
Q |
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| T |
36663734 |
cacaagtatttgattgaactaaagaagactgaagttgtgatataatctttg-------acatgggttctttaagtgcctcagcttctgcttccttt |
36663822 |
T |
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