View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20334_high_11 (Length: 312)
Name: NF20334_high_11
Description: NF20334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20334_high_11 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 52985453 - 52985750
Alignment:
| Q |
15 |
gaaggagatgggtgccttcaaaacatgcacatacatttagagccaaaataatcaataattgcaacaaaaattggttgaccagggatcgaaaattggtact |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52985453 |
gaaggagatgggtgccttcaaaacatgcacatacatttagagccaaaataatcaataattgcaacaaaaattggttgaccagggatcgaaaattggtact |
52985552 |
T |
|
| Q |
115 |
tacagaagtagctccaccagtctgccgcatatacctgcctcaatcacctcttggattatgtcatttgttccatcagaaagatatgagattgcccaacatg |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52985553 |
tacagaagtagctccaccagtctgccacatatacctgcctcaatcacctcttggattatgtcatttgttccatcagaaagatatgagattgcccaacatg |
52985652 |
T |
|
| Q |
215 |
catctgttttcaattttcatcattagaaaaaaccaaacgctcaaaagtaggaagcgctagcctcacctgtccatcaatatcctactattaattaatac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52985653 |
catctgttttcaattttcatcattagaaaaaaccaaacgctcaagagtaggaagcgctagcctcacctgtccatcaatatcctactattaattaatac |
52985750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 54861762 - 54862055
Alignment:
| Q |
15 |
gaaggagatgggtgccttcaaaacatgcacatacatttagagccaaaataatcaataattgcaacaaaa-attggttgaccagggatcgaaaattggtac |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||||| |||||||||| | ||||||||| |
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| T |
54861762 |
gaaggagatgggtgccttcaaaacatgcacatatatttagagccaaaataatcaataattgcaatagaatattggctgaccagggaataagaattggtac |
54861861 |
T |
|
| Q |
114 |
ttacagaagtagctccaccagtctgccgcatatacctgcctcaatcacctcttggattatgtcatttgttccatcagaaagatatgagattgcccaacat |
213 |
Q |
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||||||||| |||| |||||||||||| |||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||| |||| |||||| ||| |
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| T |
54861862 |
ttacagaaggagctgcaccagtctgccacatacacctgcctcgatcaccgcttggatattgtcatttgttccatcagaaagatacgagagtgcccaccat |
54861961 |
T |
|
| Q |
214 |
gcatctgttttcaatt-ttcatcattagaaaaaaccaaacgctcaaaagtaggaagcgctagcctcacctgtccatcaatatcctactattaat |
306 |
Q |
| |
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||||| ||| | || ||| || || |||||||||||| ||| | || ||||||||| |||||| ||||||||||| || ||| ||||||| |
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| T |
54861962 |
gcatcggttaggacttcttcgtctttggaaaaaaccaaatgcttgagagcgggaagcgctggcctcatctgtccatcaaaattctagtattaat |
54862055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 55665153 - 55665358
Alignment:
| Q |
15 |
gaaggagatgggtgccttcaaaacatgcacatacatttagagccaaaataatcaataattgcaacaaaa-attggttgaccagggatcgaaaa-ttggta |
112 |
Q |
| |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||||| |||||| |
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| T |
55665153 |
gaaggagatgggtaccttcaaaacatgcgcatacatttagagccaaaataatcaataattgaaacaaattattggtgcaccagggatagaaaaattggta |
55665252 |
T |
|
| Q |
113 |
cttacagaagtagctccaccagtctgccgcatatacctgcctcaatcacctcttggattatgtcatttgttccatcagaaagatatgagattgcccaaca |
212 |
Q |
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||||| |||| ||||||||||||||||| |||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
55665253 |
cttactgaagaagctccaccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatcagaaagatatgagaatgcccaaca |
55665352 |
T |
|
| Q |
213 |
tgcatc |
218 |
Q |
| |
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|||||| |
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| T |
55665353 |
tgcatc |
55665358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 55635803 - 55635530
Alignment:
| Q |
15 |
gaaggagatgggtgccttcaaaacatgcacatacatttagagccaaaataatcaataattgcaaca-aaaattggttgaccagggatcgaa-aattggta |
112 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||| ||| ||||||| |
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| T |
55635803 |
gaaggagatgggtgccttcaaaacattcacatacatttagaggcaaaataatcaataattgcaatagaaaattggttgaacagggatagaagaattggtg |
55635704 |
T |
|
| Q |
113 |
cttacagaagtagctccaccagtctgccgcatatacctgcctcaatcacctcttggattatgtcatttgttccatcagaaaga-tatgagattgcccaac |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |||||| | ||||| |||||||| ||||||| |||||||||||| | ||||||| |||||| | |
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| T |
55635703 |
cttacagaaggagctccaccagtctgccacatacacctgcgttgatcactgcttggattttgtcattcattccatcagaaatattatgagagtgcccagc |
55635604 |
T |
|
| Q |
212 |
atgcatctgttttcaatt-ttcatcattagaaaaaaccaaacgctcaaaagtaggaagcgctagcctcacctgt |
284 |
Q |
| |
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||||||||| | || ||||||||| ||||||| ||||||||| | ||| ||||| ||| ||||||||||| |
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| T |
55635603 |
atgcatctgacaggacttcttcatcattggaaaaaatcaaacgctcgagagtgggaagtgctggcctcacctgt |
55635530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 54627577 - 54627379
Alignment:
| Q |
19 |
gagatgggtgccttcaaaacatgcacatacatttagagccaaaataatcaataattgcaacaaaa-attggttgaccagggatcgaa-aattggtactta |
116 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||| |||||| || |||||||||||| |
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| T |
54627577 |
gagatggttcccttcaaaacatgcacatacatttagagccaaaataatcaatacttgcaatagaacattggttgacgagggatataagaattggtactta |
54627478 |
T |
|
| Q |
117 |
cagaagtagctccaccagtctgccgcatatacctgcctcaatcacctcttggattatgtcatttgttccatcagaaagatatgagattgcccaacatgc |
215 |
Q |
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|||||| | | ||||||||| || |||| ||||||||| |||||| ||||||| | ||| ||||||||||||||||||| |||| |||||||||||| |
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| T |
54627477 |
cagaaggatttgcaccagtctaccacatacacctgcctcgatcaccgcttggatattatcacttgttccatcagaaagatacgagagtgcccaacatgc |
54627379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 55658938 - 55659220
Alignment:
| Q |
15 |
gaaggagatgggtgccttcaaaacatgcacatacatttagagccaaaataatcaataattgcaaca-aaaattggttgaccagggatcgaa-aattggta |
112 |
Q |
| |
|
|||||||| ||| ||||||||||||||| | || ||||||||||||||||||||| |||||||||| |||||||||||||||||||| || | |||||| |
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|
| T |
55658938 |
gaaggagacgggcgccttcaaaacatgcgcgtagatttagagccaaaataatcaacaattgcaacagaaaattggttgaccagggatataagatttggta |
55659037 |
T |
|
| Q |
113 |
cttacagaagtagctccaccagtctgccgcatatacctgcctcaatcacctcttggattatgtcatttgttcca---tcagaaagatatgagattgccca |
209 |
Q |
| |
|
|||||| ||| ||||| || ||||| | ||||| || ||||| || ||| |||||||| |||||||| ||| | |||||||||||||| |||||| |
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|
| T |
55659038 |
cttacaaaaggagctctactagtctatcacatatgccagcctcgattaccgcttggatttcgtcatttgaaccatatttagaaagatatgagagtgccca |
55659137 |
T |
|
| Q |
210 |
acatgcatctgttttcaatt-ttcatcattagaaaaaaccaaacgctcaaaagtaggaagcgctagcctcacctgtccatcaa |
291 |
Q |
| |
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||||| ||||| | || ||||||||| ||||||| ||||||| | |||||||| ||| ||||||||| |||||||| |
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| T |
55659138 |
gcatgcttctgtcacgacttcttcatcattggaaaaaatcaaacgcctgagggtaggaagtgcttgcctcacctatccatcaa |
55659220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 3671698 - 3671794
Alignment:
| Q |
124 |
agctccaccagtctgccgcatatacctgcctcaatcacctcttggattatgtcatttgttccatcagaaagatatgagattgcccaacatgcatctg |
220 |
Q |
| |
|
||||||||||||||||| || | ||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
3671698 |
agctccaccagtctgccacaaacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatctg |
3671794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 288
Target Start/End: Complemental strand, 9890070 - 9889805
Alignment:
| Q |
15 |
gaaggagatgggtgccttcaaaacatgcacatacatttagagccaaaataatcaataattgcaacaaaaattggttgaccagggatcgaa-aattggtac |
113 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| |||||||||||||| |||| |||||||| |||| || ||||||| ||| ||||||||| |
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|
| T |
9890070 |
gaaggagaagggttccttcaaaacatgcacatgcatttagagccaaattaataaataattgaaaca----------gagcagggatagaagaattggtac |
9889981 |
T |
|
| Q |
114 |
ttacagaagtagctccaccagtctgccgcatatacctgcctcaatcacctcttggattatgtcatttgttccatcagaaagatatgagattgcccaacat |
213 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||| ||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||| |
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|
| T |
9889980 |
ttacaaaaggagctccaccagtctgccacatacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcat |
9889881 |
T |
|
| Q |
214 |
gcatctgttttcaatt-ttcatcattagaaaaaaccaaacgctcaaaagtaggaagcgctagcctcacctgtccat |
288 |
Q |
| |
|
||||||| | || ||||||||| ||||||| |||| |||| | ||| ||||| ||| |||||| |||||||| |
|
|
| T |
9889880 |
gcatctgccaggacttcttcatcattggaaaaaatcaaaagctcgagagtgggaagtgctggcctcaactgtccat |
9889805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 13401884 - 13401703
Alignment:
| Q |
111 |
tacttacagaagtagctccaccagtctgccgcatatacctgcctcaatcacctcttggattatgtcatttgttccatcagaaagatatgagattgcccaa |
210 |
Q |
| |
|
|||| ||||||| |||| ||| |||||||| |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||| |
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|
| T |
13401884 |
tactcacagaaggagctgcactagtctgccacatacacctgcctcaatcaccgcttggattttgtcatttgttccatcagaaagataagagagtgcccag |
13401785 |
T |
|
| Q |
211 |
catgcatctgttttcaatt-ttcatcattagaaaaaaccaaacgctcaaaagtaggaagcgctagcctcacctgtccatcaa |
291 |
Q |
| |
|
||||||||||| | || ||||||||| ||||||||||||||||||| || ||||| ||| |||||||||||||||||| |
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|
| T |
13401784 |
catgcatctgtcaggacttcttcatcatttgaaaaaaccaaacgctcaagagccggaagtgctggcctcacctgtccatcaa |
13401703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 13401982 - 13401919
Alignment:
| Q |
15 |
gaaggagatgggtgccttcaaaacatgcacatacatttagagccaaaataatcaataattgcaa |
78 |
Q |
| |
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||||||||||||||||| ||| ||||||| ||| |||||||| ||||| ||||||||| ||||| |
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| T |
13401982 |
gaaggagatgggtgcctacaacacatgcatataaatttagagtcaaaacaatcaataactgcaa |
13401919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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