View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20334_high_12 (Length: 287)
Name: NF20334_high_12
Description: NF20334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20334_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 283
Target Start/End: Original strand, 1227833 - 1228103
Alignment:
| Q |
13 |
atactattatttatttttaactttatctctgttgaaatgaataggttgctaacatgagctatgcaagaaaagatttaggagagctttggaagaataagat |
112 |
Q |
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| T |
1227833 |
atactattatttatttttaactttatctctgttgaaatgaataggttgctaacatgagctatgcaagaaaagatctaggagacctttggaagaataagat |
1227932 |
T |
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| Q |
113 |
gaataagcaacctatgcctgaagcaattaaaaaccttattcaagttccaaaagcattaggtgaaggaaaagaagatcattcttttactaccgactttgat |
212 |
Q |
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| T |
1227933 |
gaataagcaacctatgcctgaagcaattaaaaactttattcaagttccaaaagcattaggtgaaggaaaagaagatcattcttttactaccgactttgat |
1228032 |
T |
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| Q |
213 |
gtaaatcctaatatcatattatatcacacccatgtgcatcaagatgagaagccttttcaacatgcagcaag |
283 |
Q |
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| T |
1228033 |
gtaaatcctaatatcatattatatcacacccatgtgcatcaagatgagaagccttttgaacatgcagcaag |
1228103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 54435306 - 54435263
Alignment:
| Q |
204 |
gactttgatgtaaatcctaatatcatattatatcacacccatgt |
247 |
Q |
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| T |
54435306 |
gactttgatgtaaagcctaatgtcatattatatcacacccatgt |
54435263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 29 - 283
Target Start/End: Original strand, 41966484 - 41966742
Alignment:
| Q |
29 |
ttaactttatctctgttgaaatga----ataggttgctaacatgagctatgcaagaaaagatttaggagagctttggaagaataagatgaataagcaacc |
124 |
Q |
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| T |
41966484 |
ttaactttatctctgttgaaattattatataggttgctaacctgagctatgcaagaaaagatttaggagactattggaagaataagatgaatgaacaacc |
41966583 |
T |
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| Q |
125 |
tatgcctgaagcaattaaaaaccttattcaagttccaaaagcattaggtgaaggaaaagaagatcattcttttactaccgactttgatgtaaatcctaat |
224 |
Q |
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| T |
41966584 |
tatgcctgaagcaattaaaaaccttattcaagttccaaaagcattagatgaaggaaaagaagatcattcttttactaccgactttgatgtaaatcctaat |
41966683 |
T |
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| Q |
225 |
atcatattatatcacacccatgtgcatcaagatgagaagccttttcaacatgcagcaag |
283 |
Q |
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| T |
41966684 |
atcatattatatcacacccatgtgcatcaagatgagaagccttttcaacatgcagcaag |
41966742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 26235642 - 26235599
Alignment:
| Q |
204 |
gactttgatgtaaatcctaatatcatattatatcacacccatgt |
247 |
Q |
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| T |
26235642 |
gactttgatgtaaagcctaatgtcatattatatcacacacatgt |
26235599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 26235756 - 26235689
Alignment:
| Q |
72 |
tatgcaagaaaagatttaggagagctttggaagaataagatgaataagcaacctatgcctgaagcaat |
139 |
Q |
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| T |
26235756 |
tatgcaagaaaagacttgggaggttattggaagaatatgatgaatgaccaacctatgcctgaagcaat |
26235689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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