View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20334_high_13 (Length: 255)

Name: NF20334_high_13
Description: NF20334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20334_high_13
NF20334_high_13
[»] chr5 (1 HSPs)
chr5 (1-211)||(28045859-28046070)
[»] chr8 (1 HSPs)
chr8 (225-254)||(5881710-5881739)
[»] chr7 (1 HSPs)
chr7 (225-254)||(36782753-36782782)
[»] chr6 (2 HSPs)
chr6 (225-254)||(29835906-29835935)
chr6 (225-254)||(29836041-29836070)
[»] chr4 (1 HSPs)
chr4 (225-254)||(55014045-55014074)
[»] chr3 (2 HSPs)
chr3 (225-254)||(7584032-7584061)
chr3 (225-254)||(25629734-25629763)
[»] chr2 (2 HSPs)
chr2 (225-254)||(7182368-7182397)
chr2 (225-254)||(39110435-39110464)
[»] chr1 (1 HSPs)
chr1 (225-254)||(7204318-7204347)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 28046070 - 28045859
Alignment:
Q  1 catggacattccaaacaaactatagttgcgtgagatgaacaaatttaacttgaaattgtcaatgatattttttaacccatgatttgaatt-aaaacttgc 99  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28046070 catggacattccaaacaaactatagttacgtgagatgaacaaatttaacttgaaattgtcaatgatattttttaacccatgatttgaattaaaaacttgc 28045971  T
Q  100 gacatcttggttgagtttccattgaaaaagctccaaaccatagtttgttaaataaaattatcttgggtnnnnnnnnnntattataacgtcctcttgataa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||    
T  28045970 gacatcttggttgagtttccattgaaaaagctccaaaccatagtttgttaaataaaattatcttgggtaaaaaaaatatattataacgtcctcttgataa 28045871  T
Q  200 taaaagaaaata 211  Q
    ||||||||||||    
T  28045870 taaaagaaaata 28045859  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 254
Target Start/End: Complemental strand, 5881739 - 5881710
Alignment:
Q  225 gtccattaacttattttttggtttcgtttt 254  Q
    ||||||||||||||||||||||||||||||    
T  5881739 gtccattaacttattttttggtttcgtttt 5881710  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 254
Target Start/End: Original strand, 36782753 - 36782782
Alignment:
Q  225 gtccattaacttattttttggtttcgtttt 254  Q
    ||||||||||||||||||||||||||||||    
T  36782753 gtccattaacttattttttggtttcgtttt 36782782  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 254
Target Start/End: Original strand, 29835906 - 29835935
Alignment:
Q  225 gtccattaacttattttttggtttcgtttt 254  Q
    ||||||||||||||||||||||||||||||    
T  29835906 gtccattaacttattttttggtttcgtttt 29835935  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 254
Target Start/End: Complemental strand, 29836070 - 29836041
Alignment:
Q  225 gtccattaacttattttttggtttcgtttt 254  Q
    ||||||||||||||||||||||||||||||    
T  29836070 gtccattaacttattttttggtttcgtttt 29836041  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 254
Target Start/End: Complemental strand, 55014074 - 55014045
Alignment:
Q  225 gtccattaacttattttttggtttcgtttt 254  Q
    ||||||||||||||||||||||||||||||    
T  55014074 gtccattaacttattttttggtttcgtttt 55014045  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 254
Target Start/End: Original strand, 7584032 - 7584061
Alignment:
Q  225 gtccattaacttattttttggtttcgtttt 254  Q
    ||||||||||||||||||||||||||||||    
T  7584032 gtccattaacttattttttggtttcgtttt 7584061  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 254
Target Start/End: Complemental strand, 25629763 - 25629734
Alignment:
Q  225 gtccattaacttattttttggtttcgtttt 254  Q
    ||||||||||||||||||||||||||||||    
T  25629763 gtccattaacttattttttggtttcgtttt 25629734  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 254
Target Start/End: Original strand, 7182368 - 7182397
Alignment:
Q  225 gtccattaacttattttttggtttcgtttt 254  Q
    ||||||||||||||||||||||||||||||    
T  7182368 gtccattaacttattttttggtttcgtttt 7182397  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 254
Target Start/End: Complemental strand, 39110464 - 39110435
Alignment:
Q  225 gtccattaacttattttttggtttcgtttt 254  Q
    ||||||||||||||||||||||||||||||    
T  39110464 gtccattaacttattttttggtttcgtttt 39110435  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 254
Target Start/End: Complemental strand, 7204347 - 7204318
Alignment:
Q  225 gtccattaacttattttttggtttcgtttt 254  Q
    ||||||||||||||||||||||||||||||    
T  7204347 gtccattaacttattttttggtttcgtttt 7204318  T

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