View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20334_high_3 (Length: 469)
Name: NF20334_high_3
Description: NF20334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20334_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 31 - 457
Target Start/End: Original strand, 41230365 - 41230784
Alignment:
| Q |
31 |
aaagatggtggtacagtcgtacctcaaaaggttctcatagttgaaaacaagttgttttccgtcgcagaactcttgcacaaacccaaacatggaagacgag |
130 |
Q |
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| T |
41230365 |
aaagatggtggtacagtcgtacctcaaaaggctctcatagttgaaaacaagttgttttccgtcgcagaactcttgcacaaacccaaacatggaagacgag |
41230464 |
T |
|
| Q |
131 |
agtggcctggttaataaaatgcaggagttttctcagccgcaatgtgctgaagcatatccaagtgaaataaagacacaagaagttggcattcgtttagggc |
230 |
Q |
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| T |
41230465 |
agtcgcctggttgataaaatgcaggagttttctcagccacaatgtgctgaagcatatccaactgaaataaagacacaagaagttggcattcgtttagggc |
41230564 |
T |
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| Q |
231 |
agacattggatcatgcaggacagtcgaactggaggtaaatttctgtctttcactacaataaga-ttttttcgactcatgagaaagagctattctgcaaat |
329 |
Q |
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| T |
41230565 |
agacattggatcatgcaggacagtcgaactggaggtaaa--------tttcactacaataagatttttttcgactcatgagaaagagctattctccaaat |
41230656 |
T |
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| Q |
330 |
tgcagtctcaaaaatgcatcaatacttgcacatgcaagtttgactattctccacaatttgatattttctcttgtaagctttcatcccagcaacttcaaga |
429 |
Q |
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| T |
41230657 |
tgcagtctcaaaaatgcatcaatacttgcacatgcaagtttgagtattctccactattggatattttctcttgtaagctttcatcccagcaacttcaaga |
41230756 |
T |
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| Q |
430 |
agtaaattgctaaaattcccttttattc |
457 |
Q |
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| T |
41230757 |
aggaaattgctaaaattcccttttattc |
41230784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 95 - 283
Target Start/End: Original strand, 42413870 - 42414057
Alignment:
| Q |
95 |
cagaactcttgcacaaacccaaacatggaagacgagagtggcctggttaataaaatgcaggagttttctcagccgcaatgtgctgaagcatatccaagtg |
194 |
Q |
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|||| |||||| |||| ||||||||||||| ||||||||||||||| |||| ||||| || |||||||||| | ||||||| |||||||||||||||| |
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| T |
42413870 |
cagagctcttgtacaaggccaaacatggaagctgagagtggcctggttgataacatgcatgaattttctcagctgaaatgtgcggaagcatatccaagtg |
42413969 |
T |
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| Q |
195 |
aaataaagacacaagaagttggcattcgtttagggcagacattggatcatgcaggacagtcgaactggaggtaaatttctgtctttcac |
283 |
Q |
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| T |
42413970 |
aaataaagacacgagaacttgacattcatttaggccaggc-tgtgatcgcgcaggacagtcacgccggaggtaaatttctttctttcac |
42414057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 424
Target Start/End: Original strand, 42414337 - 42414434
Alignment:
| Q |
327 |
aattgcagtctcaaaaatgcatcaa-tacttgcacatgcaagtttgactattctccacaatttgatattttctcttgtaagctttcatcccagcaactt |
424 |
Q |
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|||||||||||||||||| |||||| | ||||||| ||||||||||| |||||||||| || ||| ||||||| ||||| ||||||||||||||| |
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| T |
42414337 |
aattgcagtctcaaaaattcatcaattgattgcacaggcaagtttgaccattctccacagttggat-ctttctctcagaagctctcatcccagcaactt |
42414434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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