View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20334_high_4 (Length: 447)
Name: NF20334_high_4
Description: NF20334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20334_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Complemental strand, 6993587 - 6993171
Alignment:
| Q |
17 |
tcattaacattactaccggtaaatcaccttccaataatgaaatcatgaaagtaaaacataaaaagagagaatattttgacttgtagaatcacaccaacac |
116 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6993587 |
tcattagcattactaccggtaaatgaccttccaataatgaaatcatgaaagtaaaacataaaaagagagaatattttgacttgtagaatcacactaacac |
6993488 |
T |
|
| Q |
117 |
aaactatatac---atattataaccacatgacatgactaaaataaatcatagttctttagtacaaattttggattaacttaagtaaatgaaatcaatgtt |
213 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993487 |
aaactatatactacatattataaccacatgacatgactaatataaatcatagttctttagtacaaattttggattaacttaagtaaatgaaatcaatgtt |
6993388 |
T |
|
| Q |
214 |
gaattattgagttattatcaacacctttgtccatgactgtggcctcaagaccaaactaggcacgctcccatcgtactccttgatttcaaatgcaactgga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993387 |
gaattattgagttattatcaacacctttgtccatgactgtggcctcaagaccaaactaggcacgctcccatcgtactccttgatttcaaatgcaactgga |
6993288 |
T |
|
| Q |
314 |
cctattaacattcaattgatgtgaaagagtaaaatatctttagactgtgataggtacaagtcggagggatggcaatgttctgttaatagcttaataagag |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6993287 |
cctattaacattcaattgatgtgaaagagtaaaatatctttagactgtgataggtacaagtcggagggaaggcaatgttctgttaatagcttaataagag |
6993188 |
T |
|
| Q |
414 |
ttcggtaattaggaaat |
430 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
6993187 |
ttcggtaattaggaaat |
6993171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 35 - 334
Target Start/End: Complemental strand, 7052087 - 7051782
Alignment:
| Q |
35 |
gtaaatcaccttccaataatgaaatcatgaaagtaaaacataaaaagagagaatattttgacttgtagaatcacaccaacacaaactatatacatattat |
134 |
Q |
| |
|
||||||||||||||||||||||||||||| || | || || | ||||| |||||||| |||||||||| | ||||| ||||| |||||||||| |
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| T |
7052087 |
gtaaatcaccttccaataatgaaatcatggaaatcaa-cacataaagaatgaatatttagacttgtagagctatcacaacaagaactaagtacatattat |
7051989 |
T |
|
| Q |
135 |
aaccac-----atgacatgactaaaataaatcatagttcttt--agtacaaattttggattaacttaagtaaatgaaatcaatgttgaattattgagtta |
227 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| || |
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| T |
7051988 |
aaccactccacatgacatgactaatataaatcatagttctcaccagtacaaattttggattaacttaagtaaatgaaattaatgtcaaattattgaggta |
7051889 |
T |
|
| Q |
228 |
ttatcaacacctttgtccatgactgtggcctcaagaccaaactaggcacgctcccatcgtactccttgatttcaaatgcaactggacctattaacattca |
327 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7051888 |
ttataaacacctttgtccatgattgtggtctcaagaccaaactaggcacgctcccgtcatactccttgatttcaaatgcaaatggacctattaacattcg |
7051789 |
T |
|
| Q |
328 |
attgatg |
334 |
Q |
| |
|
||||||| |
|
|
| T |
7051788 |
attgatg |
7051782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 156 - 334
Target Start/End: Complemental strand, 7046048 - 7045868
Alignment:
| Q |
156 |
taaatcatagttctt--tagtacaaattttggattaacttaagtaaatgaaatcaatgttgaattattgagttattatcaacacctttgtccatgactgt |
253 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
7046048 |
taaatcatagttcttattagtacaaattttagattaacttaagtaaatgaaatcaatgctgaattattgagttgttaccaacacctttgtccatgactgt |
7045949 |
T |
|
| Q |
254 |
ggcctcaagaccaaactaggcacgctcccatcgtactccttgatttcaaatgcaactggacctattaacattcaattgatg |
334 |
Q |
| |
|
||||| ||||||||||||||| |||||| | ||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
7045948 |
ggccttgagaccaaactaggcaagctcccgttgtactccttgatttcgaatgcaaatggacctattaacattcaattgatg |
7045868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 7013146 - 7012831
Alignment:
| Q |
16 |
atcattaacattactaccggtaaatcaccttccaataatgaaatcatgaaagtaaaacataaaaagagagaatattttgacttgtagaatcacaccaaca |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| ||||||||||| |||| ||||||||| ||||||||||| ||||||| | || || |
|
|
| T |
7013146 |
atcattaacattactaccagtaaatcaccttcaaataacaaaatcatgaaaagaaaatataaaaagaatgaatattttgaattgtagagctatctcatca |
7013047 |
T |
|
| Q |
116 |
caaactatatacatattataaccacatgacatgactaaa---ataaatcatagttctttagtacaaattttggattaacttaagtaaatgaaatcaatgt |
212 |
Q |
| |
|
|||| |||||||||||||||||| |||| ||| || | ||| || || ||||| | ||| |||| |||||||||||||||| |||||| ||| |
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|
| T |
7013046 |
caaattatatacatattataacctcatggcatatatatatatatatatattatttcttatcca-aaactttgaattaacttaagtaaattaaatcagtgt |
7012948 |
T |
|
| Q |
213 |
tgaattattgagttattatcaacacctttgtccatgactgtggcctcaagaccaaactaggcacgctcccatcgtactccttgatttcaaatgcaactgg |
312 |
Q |
| |
|
|| || |||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
7012947 |
tggataattgaggtgctctcaacacctttgtccatgactgtggccttgagaccaaactaggcacgctcccatcgtactccttgttttcaaatgcaactgg |
7012848 |
T |
|
| Q |
313 |
acctattaacattcaat |
329 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
7012847 |
acctattaacatccaat |
7012831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 182 - 334
Target Start/End: Complemental strand, 7019453 - 7019301
Alignment:
| Q |
182 |
ttggattaacttaagtaaatgaaatcaatgttgaattattgagttattatcaacacctttgtccatgactgtggcctcaagaccaaactaggcacgctcc |
281 |
Q |
| |
|
|||||||||||| | | |||||||||||| |||| | |||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
7019453 |
ttggattaacttcaatgaatgaaatcaattttgagtaattgaggtgttatcaacacctttgtccatgaatgtggcctcaagaccaaactaggcacactcc |
7019354 |
T |
|
| Q |
282 |
catcgtactccttgatttcaaatgcaactggacctattaacattcaattgatg |
334 |
Q |
| |
|
| | ||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
7019353 |
cgttgtactccttgatttcaaatgcaaatggacctaacaacattcaattgatg |
7019301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 219 - 320
Target Start/End: Complemental strand, 7026222 - 7026121
Alignment:
| Q |
219 |
attgagttattatcaacacctttgtccatgactgtggcctcaagaccaaactaggcacgctcccatcgtactccttgatttcaaatgcaactggacctat |
318 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| |
|
|
| T |
7026222 |
attgaggtgttatcaacacctttgtccatgactgtggccttaagaccaaactaggcacgctcccgttgtactccttgatttcaaatgcaaatggacctat |
7026123 |
T |
|
| Q |
319 |
ta |
320 |
Q |
| |
|
|| |
|
|
| T |
7026122 |
ta |
7026121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 7003557 - 7003454
Alignment:
| Q |
229 |
tatcaacacctttgtccatgactgtggcctcaagaccaaactaggcacgctcccatcgtactccttgatttcaaatgcaactggacctattaacattcaa |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
7003557 |
tatcaacacctttgtccatgactgtggccttgagaccaaaccgggcatactcccatcgtactccttgatttcaaatgcaactggacctataaacatccaa |
7003458 |
T |
|
| Q |
329 |
ttga |
332 |
Q |
| |
|
|||| |
|
|
| T |
7003457 |
ttga |
7003454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 181 - 334
Target Start/End: Complemental strand, 7038688 - 7038535
Alignment:
| Q |
181 |
tttggattaacttaagtaaatgaaatcaatgttgaattattgagttattatcaacacctttgtccatgactgtggcctcaagaccaaactaggcacgctc |
280 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||| || |||||| | | | |||||||||||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
7038688 |
tttgaattaacttaagtaaataaaatcagagttggataattgaggtgctctaaacacctttgtccatgactggggccttgataccaaactaggcacgctc |
7038589 |
T |
|
| Q |
281 |
ccatcgtactccttgatttcaaatgcaactggacctattaacattcaattgatg |
334 |
Q |
| |
|
|| | ||||||||||||||| || ||| |||||||||||| |||||||||||| |
|
|
| T |
7038588 |
ccgttgtactccttgatttcgaacacaaatggacctattaatattcaattgatg |
7038535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 7046103 - 7046040
Alignment:
| Q |
13 |
aatatcattaacattactaccggtaaatcaccttccaataatgaaatcatgaaagtaaaacata |
76 |
Q |
| |
|
||||||||||| |||||| || ||||| || |||||||||||||||||||||||||||| |||| |
|
|
| T |
7046103 |
aatatcattaaaattacttccagtaaaacatcttccaataatgaaatcatgaaagtaaatcata |
7046040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 7003706 - 7003656
Alignment:
| Q |
16 |
atcattaacattactaccggtaaatcaccttccaataatgaaatcatgaaa |
66 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
7003706 |
atcattaacattactacgagtaaatcaccttccaataatgaaatcaggaaa |
7003656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 7038820 - 7038770
Alignment:
| Q |
16 |
atcattaacattactaccggtaaatcaccttccaataatgaaatcatgaaa |
66 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
7038820 |
atcattaacattactaccagtaaatcacctttgaataacaaaatcatgaaa |
7038770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 7003618 - 7003567
Alignment:
| Q |
140 |
catgacatgactaaaataaatcatagttct--ttagtacaaattttggatta |
189 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
7003618 |
catgacatgactgatataaatcatagttcttattagaacaaattttggatta |
7003567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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