View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20334_high_7 (Length: 365)
Name: NF20334_high_7
Description: NF20334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20334_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 53 - 354
Target Start/End: Original strand, 39393345 - 39393646
Alignment:
| Q |
53 |
agaaaaatattatagttaatgttcaaactttattcttaacgaccaaggacattggttggttcgacgttgattccgtccaaagtccaatatatcttccaat |
152 |
Q |
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| T |
39393345 |
agaaaaatattatagttaatcttgaagctttattcttaacgactaaggacattggttggttcgacgttgattccgtcaaaagtccaatatatcttccaat |
39393444 |
T |
|
| Q |
153 |
tccaaactattttttcttctcattttcattcacttagcctcctataccacaaggtaa-ccccgtcaacctagtacacacgttcttttgctctttttctcc |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39393445 |
tccaaactattttttcttctcattttcattcacttagcctcctataccacaaggtaacccccgtcaacctagtacacacgttcttttgctctttttctcc |
39393544 |
T |
|
| Q |
252 |
tatattcctgtctcattactttttccaacattctaattatataacccttcctaaattcatgatttacctatcattaactattcaaatcattcattacctt |
351 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39393545 |
tatattcctgtctcattac-ttttccaacattctaattatataacccttcctaaattcatgatttacctatcattaactattcaaatcattcattacctt |
39393643 |
T |
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| Q |
352 |
ctt |
354 |
Q |
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||| |
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| T |
39393644 |
ctt |
39393646 |
T |
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