View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20334_low_1 (Length: 744)
Name: NF20334_low_1
Description: NF20334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20334_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 283 - 725
Target Start/End: Complemental strand, 9406213 - 9405771
Alignment:
| Q |
283 |
aaacatatatccttttacctgcatacaattagcggcggctaggctatgccgcaaagtttaaattttaaatttgcctccagcttttgtggcggcctggatc |
382 |
Q |
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| T |
9406213 |
aaacatgtatccttttacctgcatacaattagcggcggctaggctttgccgcaaagtttaaattttaaattttccgccagcttttgtgggggcctggatc |
9406114 |
T |
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| Q |
383 |
cttcgtaaagttcttttttaatgcagtttgcgacagctttcttctgtcgcaaattttaaatttaaatttttgttttccagcttagaattggcgtcagact |
482 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
9406113 |
cttcgtaaagttcttttttaatacagtttgcgacagctttcttctgttgcaaattttaaatttaaatttttgttttccagtttagaattggcgtcagatt |
9406014 |
T |
|
| Q |
483 |
tatttttgccgcaaatattttttgaaattaatttaaatagaaatatatttgtgtgggctctttttcgccacaaatgcatataatgccgcaacaaatttgc |
582 |
Q |
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| T |
9406013 |
tatttttgccgcaaatattttttgaaattaatttaaatagaaatacatttgtgtgggctctttttcgccacaaatgcatataatgccgcaacaaatttgc |
9405914 |
T |
|
| Q |
583 |
gtgagaactaaatctgttgcaaattgtttatgttaaatcaatgaattcttgtagtgattatgcacaagttcctaaaccttaatgctcaacattccttgtc |
682 |
Q |
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| T |
9405913 |
gtgagaactaaatttgttgcaaattgtttatgttaaatcaatgaattcttgtagtgattatgcacaagttcctaaatcttaatgctcaacattccttgtc |
9405814 |
T |
|
| Q |
683 |
tggtcaatgtgctcaggattctcaacaatctcaacattatgta |
725 |
Q |
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| T |
9405813 |
tggtcaatgtgctcatgattctcaacatgctcaacattatgta |
9405771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 9406411 - 9406264
Alignment:
| Q |
85 |
ggatatttgcggcggcctattgtatgacacaaatgccaaaggtacaaaaatgtagtcatagaggtttagcgatggcttatatctgccgcaaaattaaaat |
184 |
Q |
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| T |
9406411 |
ggatattttcggcggcctattgtatgacacaaatgccaaaggtacaaaaatgtagtcatagaggtttagcgacggcttatatctgccgcaaaattaaaat |
9406312 |
T |
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| Q |
185 |
tttgaatttgccgtccaacatttgcattgggtagcatatgtagcaaag |
232 |
Q |
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| T |
9406311 |
tttgaatttgccgcctaacatttgcgttgggtaggatatgtagcaaag |
9406264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9406478 - 9406446
Alignment:
| Q |
1 |
aagaataagtgaaagagtaagaagtgtatatat |
33 |
Q |
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| T |
9406478 |
aagaataagtgaaagagtaagaagtgtatatat |
9406446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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