View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20334_low_16 (Length: 228)
Name: NF20334_low_16
Description: NF20334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20334_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 39187422 - 39187227
Alignment:
| Q |
17 |
actcaaagatgtgggttacccggttaagcttggaagtggagttgctgctgctagtgcttatttactaaacaatgttcctctaatcccttcaagaatttga |
116 |
Q |
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| T |
39187422 |
actcaaagatgtgggttacccggttaagcttggaagtggagttgctgctgctagtgcttatttactaaacaatgttcctctaatcccttcaagaatttga |
39187323 |
T |
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| Q |
117 |
gtcacatgaattattcttgtgattatttattttctgttttgtcatgtattaattctatatcagtgcaatgcattggaaataatgtgattggatagt |
212 |
Q |
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| T |
39187322 |
gtcacatgaattattcttgtgattatttattttctgttttgtcatgtattaattctatatcagtgcaatgcattggaaataatgtgattggatagt |
39187227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 39183261 - 39183068
Alignment:
| Q |
17 |
actcaaagatgtgggttacccggttaagcttggaagtggagttgctgctgctagtgcttatttactaaacaatgttcctctaatcccttcaagaatttga |
116 |
Q |
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| T |
39183261 |
actcaaagatgtgggttacccggtcaagcttggaagtggagttactgctgcaagtgcttatttactgaacaatgttcctctaatcccttcaagaatttga |
39183162 |
T |
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| Q |
117 |
gtcacatgaattattcttgtgattatttattttctgttttgtcatgtattaattctatatcagtgcaatgcattggaaataatgtgattggatagt |
212 |
Q |
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||||||||||||||||||| |||||||| ||||||||| | ||||||||| || || ||||||||||||||||||| ||||||||||||||||||| |
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| T |
39183161 |
gtcacatgaattattcttgagattattt-ttttctgttctttcatgtatt-atactctatcagtgcaatgcattgggaataatgtgattggatagt |
39183068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 28458319 - 28458129
Alignment:
| Q |
17 |
actcaaagatgtgggttacccggttaagcttggaagtggagttgctgctgctagtgcttatttactaaacaatgttcctctaatcccttcaagaatttga |
116 |
Q |
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||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28458319 |
actcaaagatgtgggttaccctgtccagctcggaagtggagttgctgctgcaagtgcttatttactaaacaatgttcctataatcccttcaagaatttga |
28458220 |
T |
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| Q |
117 |
gtcacatgaattattcttgtgattatttattttctgttttgtcatgtattaattctatatcagtgcaatgcattggaaataatgtgattgga |
208 |
Q |
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|||||||||||| ||||||| ||||||| |||||| || | ||||||||| || | ||||| ||||||||||||| ||||||||||||||| |
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| T |
28458219 |
gtcacatgaatttttcttgttattatttcttttctattctttcatgtatt-atacagtatcaatgcaatgcattgggaataatgtgattgga |
28458129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 41262793 - 41262914
Alignment:
| Q |
10 |
agataatactcaaagatgtgggttacccggttaagcttggaagtggagttgctgctgctagtgcttatttactaaacaatgttcctctaatcccttcaag |
109 |
Q |
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|||| ||||||||||| |||||||||| | | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
41262793 |
agatgatactcaaagaagtgggttacctgctcaagcttggaagtggagttgctgctgcaagtgcttatttactgaacaatgttcctctaatcccttcaag |
41262892 |
T |
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| Q |
110 |
aatttgagtcacatgaattatt |
131 |
Q |
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||| |||||||||||||||||| |
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| T |
41262893 |
aatctgagtcacatgaattatt |
41262914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 16793234 - 16793348
Alignment:
| Q |
10 |
agataatactcaaagatgtgggttacccggttaagcttggaagtggagttgctgctgctagtgcttatttactaaacaatgttcctctaatcccttcaag |
109 |
Q |
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|||| |||||||||||||| ||||| || || || | |||||||||||||||||||| ||||| || |||| |||||| ||||||| ||||||||||| |
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| T |
16793234 |
agatgatactcaaagatgttggttatccagtaaaattgggaagtggagttgctgctgccagtgcatacttacagaacaatattcctctcatcccttcaag |
16793333 |
T |
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| Q |
110 |
aatttgagtcacatg |
124 |
Q |
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|||||||| ||||| |
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| T |
16793334 |
gatttgagttacatg |
16793348 |
T |
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