View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20334_low_6 (Length: 379)
Name: NF20334_low_6
Description: NF20334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20334_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 44851719 - 44851355
Alignment:
| Q |
1 |
ggtccccaatcaatgaaattgcaaacctaagtctcctcttcatccctccactgtattttccacattgtttatcagcaacccctccatggaaaaggtttaa |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44851719 |
ggtccccaatcaatgaaattgcaacactaagtctcctcttcatccctccactgtattttccacattgtttatcagcaacccctccatagaaaaggtttaa |
44851620 |
T |
|
| Q |
101 |
actcttcaaagattcttctactgcctgtaacaatataatggtagctaaatagttacaattatcactaccaaacaaattttatagatccatactcttcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44851619 |
actcttcaaagattcttctactgcctgtaacaatataatggtagctaaatagttacaattatcactgccaaacaaattttatagatccatactcttcaca |
44851520 |
T |
|
| Q |
201 |
gaaaaataagcaataaaaatttgttgagatatatgttgttgaagacttaaagcacctaaaatgtattttgtctattcaacaagttccct-ttttaaatac |
299 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
44851519 |
gaaaaataagcaataaaaatttgttgagaaatatgttgttgaagacttaaagcacctaaaatgtattttgtcttttcaacaagttcccttttttaaatac |
44851420 |
T |
|
| Q |
300 |
ctttttctgaataaaactaagatatttcattggtaatcataaaaagcttgttccttaattggttt |
364 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851419 |
ctttttctgaataaaactgagatatttcattggtaatcataaaaagcttgttccttaattggttt |
44851355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 44840232 - 44840078
Alignment:
| Q |
1 |
ggtccccaatcaatgaaattgcaaacctaagtctcctcttcatccctccactgtattttccacattgtttatcagcaacccctccatggaaaaggtttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| || |
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| T |
44840232 |
ggtccccaatcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttgtttatcagcaatccctccatggtaaaggttcaa |
44840133 |
T |
|
| Q |
101 |
actcttcaaagattcttctactgcctgtaacaatataatggtagctaaatagtta |
155 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
44840132 |
actcttcaaagattcttctactgcctgtaacaatataatggatgctaaatagtta |
44840078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 44866051 - 44865896
Alignment:
| Q |
1 |
ggtccccaatcaatgaaattgcaaacctaagtctcctcttcatccctccactgtattttccacattgtttatcagcaacccctccatggaaaaggtttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
44866051 |
ggtccccaatcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttttttatcagcaacccctccatggaaaaggtttaa |
44865952 |
T |
|
| Q |
101 |
actcttcaaagattcttctactgcctgtaacaatataatggtagctaaatagttac |
156 |
Q |
| |
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| |||||||||||||||||||||||||||||| || |||| |||||||||||||| |
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|
| T |
44865951 |
attcttcaaagattcttctactgcctgtaacagtagaatgcaagctaaatagttac |
44865896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 44900632 - 44900473
Alignment:
| Q |
1 |
ggtccccaatcaatgaaattgcaaacctaagtctcctcttcatccctccactgtattttccacattgtttatcagcaacccctccatggaaaaggtttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |
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| T |
44900632 |
ggtccccaatcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttcctgcttgcttatcagcaacacctccatggaaaaggtttaa |
44900533 |
T |
|
| Q |
101 |
actcttcaaagattcttctactgcctgtaacaatataatggtagctaaatagttacaatt |
160 |
Q |
| |
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| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| |
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| T |
44900532 |
attcttcaaagattcttctactgcctgcaacaataaaatggaagctaaatagttacaatt |
44900473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 44883916 - 44883757
Alignment:
| Q |
1 |
ggtccccaatcaatgaaattgcaaacctaagtctcctcttcatccctccactgtattttccacattgtttatcagcaacccctccatggaaaaggtttaa |
100 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
44883916 |
ggtccccaatcaatgaaatggcaacactaagcctcctcttcatccctccactgtattttccagcttgtttatcagcaacccctccatagaaaaggtttaa |
44883817 |
T |
|
| Q |
101 |
actcttcaaagattcttctactgcctgtaacaatataatggtagctaaatagttacaatt |
160 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||| | | | ||||||| | |||||||| |
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|
| T |
44883816 |
aaccttcaaagattcttctactgcctgcaacaataaattagaagctaaacatttacaatt |
44883757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 44865826 - 44865782
Alignment:
| Q |
177 |
ttttatagatccatactcttcacagaaaaataagcaataaaaatt |
221 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
44865826 |
ttttacagatccgtactcttcacagaataataagcaataaaaatt |
44865782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 12924838 - 12924953
Alignment:
| Q |
12 |
aatgaaattgcaaacctaagtctcctcttcatccctccactgtattttccacattgtttatcagcaacccctccatggaaaaggtttaaactcttcaaag |
111 |
Q |
| |
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||||||||||||| ||||| ||||||||||| |||||||| ||||||||| | |||||||||||||||||| || |||||||||| ||| ||||||| |
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| T |
12924838 |
aatgaaattgcaacactaagcctcctcttcattcctccactatattttccagcctttttatcagcaacccctccgtgaaaaaggtttacacttttcaaag |
12924937 |
T |
|
| Q |
112 |
attcttctactgcctg |
127 |
Q |
| |
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||||||| || ||||| |
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| T |
12924938 |
attcttccaccgcctg |
12924953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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