View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20334_low_8 (Length: 326)
Name: NF20334_low_8
Description: NF20334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20334_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 51229035 - 51228737
Alignment:
| Q |
1 |
tgtcatcatcttaaaagaaatatgaaaatatatcagtttattgtaagagatatatgtatagatgaattataatgaatcactcacacacatgtacaaacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
51229035 |
tgtcatcatcttaaaagaaatatgaaaatatatcagtttattgtaaga----tatgtatagatgaattataatgaatcactcacacacctgtacaaacaa |
51228940 |
T |
|
| Q |
101 |
agaaagttggtaccttggctttcatggattagtcccaccattcacaaattaaatgaatttaggtaggtacttgtcttatatgtagttttttcctttgtgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51228939 |
agaaagttggtaccttggctttcatggattagtcccaccattcacaact-----gaatttaggtaggtacttgtcttatatgtagttttttcctttgtgg |
51228845 |
T |
|
| Q |
201 |
caatatatattttgattatgagagagttggaaatgtataatggaggagaaggctatggagagaaaaagagttgtaggtggttgagtatataggtaaataa |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51228844 |
caatacatattttgattatgagagagttggaaatgtataatggaggagaaggctatggagagaaaaagagttgtaggtggttgagtatataggtaaataa |
51228745 |
T |
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