View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20334_low_9 (Length: 321)

Name: NF20334_low_9
Description: NF20334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20334_low_9
NF20334_low_9
[»] chr2 (1 HSPs)
chr2 (14-314)||(3592974-3593272)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 3592974 - 3593272
Alignment:
Q  14 aaatgttagtagcaagttaacaatcatggacctcttatacgtagaatctatgaaacactaatatagacataataacggagataatatgatattaatatgt 113  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  3592974 aaatgttagtagcaagttaacaatcatggacctcttata--tagaatctatgaaacactaatatagacataataacggacacaatatgatattaatatgt 3593071  T
Q  114 tgacattttaacaatttgattgaacgtaattacatatgttgatatagtgtataatggtattatacattgacatatattagacacttgaacacacttaaat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||       
T  3593072 tgacattttaacaatttgattgaacgtaattacatatgttgatatagtgtataatggtattatatattgacatgtattagacacttgaacgcacttacga 3593171  T
Q  214 aatgaaatattgatgctacaaagtatagaactattttaatgttatataaagttagggaattgttaaaatttgttcaagggagttagaagtttgtgatgat 313  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3593172 tatgagatattgatgctacaaagtatagaactattttaatgttatataaagttagggaattgttaaaatttgttcaagggagttagaagtttgtgatgat 3593271  T

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