View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20335_high_1 (Length: 708)

Name: NF20335_high_1
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20335_high_1
NF20335_high_1
[»] chr1 (1 HSPs)
chr1 (9-680)||(29319983-29320656)


Alignment Details
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 9 - 680
Target Start/End: Original strand, 29319983 - 29320656
Alignment:
Q  9 attattctatatatttatttagtattttatcttaattttcaattaatatagtaccccaaaaaagttcaattgatgttttttaatgaaatttagatgagtt 108  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29319983 attactctatatatatatttagtattttatcttaattttcaattaatatagtaccccaaaaaagttcaattgatgttttttaatgaaatttagatgagtt 29320082  T
Q  109 gtgtctcaggaactcatcgtggata----aggattattgattctaacatgtcaaacatgtagctattttttgttttaatatattcttacatgcatgttct 204  Q
    |||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29320083 gtgtctcagggactcatcgtggatatataaggattattgattctaacatgtcaaacatgtagctattttttgttttaatatattcttacatgcatgttct 29320182  T
Q  205 aaaaatgtagcaatgcgggccgagtagaaattaatgttttataacatgtgagaaaagnnnnnnnnngatgaacgactaattaaacatttgggagaaatat 304  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||          |||||| |||||||||||||||||||||||||||    
T  29320183 aaaaatgtagcaatgcgggacgagtagaaattaatgttttataacatgtgagaaaa--aaaaagaagatgaatgactaattaaacatttgggagaaatat 29320280  T
Q  305 tgtaatatctaaggtcgaattgtagaaatgtccctatagtagacgtatagcattattttggcctttggctaggcttaattgtcccttatactattttcat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29320281 tgtaatatctaaggtcgaattgtagaaatgtccctatagtagacgtatagcattattttggcctttggctaggcttaattgtcccttatactattttcat 29320380  T
Q  405 aatatatgcataatctttggtgttatgaaatatgtaaagtagcttattttatcatattgagttggtatgttttgaagacttcaaatgatttgtccattgt 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29320381 aatatatgcataatctttggtgttatgaaatatgtaaagtagcttattttatcatattgagttggtatgttttgaagacttcaaatgatttgtccattgt 29320480  T
Q  505 ttttgcaatctgcacgtaaaatatatgtttacaatgattggtcatcttttgatccttcccataagatgagaaaatgcaatgataaaagtgatttagatga 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29320481 ttttgcaatctgcacgtaaaatatatgtttacaatgattggtcatcttttgatccttcccataagatgagaaaatgcaatgataaaagtgatttagatga 29320580  T
Q  605 aagtgcaagctgatatttttgaaattgaaagattgaaatgaaatgaatgattaaaaggcagtctaatattaccata 680  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29320581 aagtgcaagttgatatttttgaaattgaaagattgaaatgaaaagaatgattaaaaggcagtctaatattaccata 29320656  T

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