View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20335_high_13 (Length: 422)

Name: NF20335_high_13
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20335_high_13
NF20335_high_13
[»] chr5 (9 HSPs)
chr5 (18-414)||(32524277-32524673)
chr5 (178-415)||(32644456-32644688)
chr5 (178-408)||(32613165-32613395)
chr5 (174-414)||(32570235-32570475)
chr5 (175-414)||(32545220-32545456)
chr5 (244-415)||(32530886-32531057)
chr5 (18-108)||(32570556-32570646)
chr5 (177-415)||(32511925-32512160)
chr5 (18-116)||(32530701-32530799)
[»] chr3 (2 HSPs)
chr3 (177-329)||(28855428-28855580)
chr3 (257-306)||(28866428-28866477)
[»] chr1 (1 HSPs)
chr1 (18-90)||(17737155-17737227)


Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 32524277 - 32524673
Alignment:
Q  18 ttagcatcaagaactacatttcgccagaccgagtcactgttgattagagtagctgcatttcctaatatccaaaggcaatatctgcgcaaaatgaactcaa 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32524277 ttagcatcaagaactacatttcgccaaaccgagtcactgttgattagagtagctgcatttcctaatatccaaaggcaatatctgcgcaaaatgaactcaa 32524376  T
Q  118 gagtttttagtaaacattagagaagcaatgcagcataacaaaataaaaatagtatttaacatacctagccctagtcatagccacatttgctctttgtcta 217  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32524377 gagttttcagtaaacattagagaagcaatgcagcataacaaaataaaaatagtatttaacatacctagccctagtcatagccacatttgctctttgtcta 32524476  T
Q  218 tttgaaagaaaaccaacattaccacttccatttgatctcacagtagatattattataatatcttcctcaccgccttggaaaccatcaacagaacgaacat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32524477 tttgaaagaaaaccaacattaccacttccatttgatctcacagtagatattattataatatcttcctcaccgccttggaaaccgtcaacagaacgaacat 32524576  T
Q  318 taacagaaaagtcagaagtagaatcccaagtgtattgcttaactttctcctggatttcattaacttgagcattatatggagatattattcctatgct 414  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32524577 taacagaaaagtccgaagtagtatcccaagtgtattgcttaactttctcctggatttcattaacttgagcattatatggagatattattcctatgct 32524673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 178 - 415
Target Start/End: Original strand, 32644456 - 32644688
Alignment:
Q  178 atacctagccctagtcatagccacatttgctctttgtctatttgaaagaaaaccaacattaccacttccatttgatctcacagtagatattattataata 277  Q
    |||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||     ||||| ||||||||||||||||||    
T  32644456 atacctagcccttgtcattgcaacattagctctttgtctatttgaaagaaaaccaacattaccacttccat-----ctcacggtagatattattataata 32644550  T
Q  278 tcttcctcaccgccttggaaaccatcaacagaacgaacattaacagaaaagtcagaagtagaatcccaagtgtattgcttaactttctcctggatttcat 377  Q
    ||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  32644551 tcttcctcacgaccttggaaaccgtcaacagaacgaacattaacagaaaagtcagaattagaatcccaagtgtcttgcttaactttctcctggatttcat 32644650  T
Q  378 taacttgagcattatatggagatattattcctatgcta 415  Q
     |||||||||||||||||||||||||||||| ||||||    
T  32644651 aaacttgagcattatatggagatattattccaatgcta 32644688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 178 - 408
Target Start/End: Original strand, 32613165 - 32613395
Alignment:
Q  178 atacctagccctagtcatagccacatttgctctttgtctatttgaaagaaaaccaacattaccacttccatttgatctcacagtagatattattataata 277  Q
    |||||||||||| ||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  32613165 atacctagcccttgtcatcgcaacattagctctttgtctatttgaaagaaaaccgacattaccactcccatttgatctcacagtagatattattataata 32613264  T
Q  278 tcttcctcaccgccttggaaaccatcaacagaacgaacattaacagaaaagtcagaagtagaatcccaagtgtattgcttaactttctcctggatttcat 377  Q
    || ||||| || |||||||| ||||||| |||||||||| | ||||||||||| | |  |||| |  ||||||| |||||||||||||| ||||||||||    
T  32613265 tcctcctcgccaccttggaatccatcaatagaacgaacacttacagaaaagtctgtatcagaaactgaagtgtactgcttaactttctcttggatttcat 32613364  T
Q  378 taacttgagcattatatggagatattattcc 408  Q
     |||||||||||||||||||||||| |||||    
T  32613365 aaacttgagcattatatggagatatgattcc 32613395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 174 - 414
Target Start/End: Complemental strand, 32570475 - 32570235
Alignment:
Q  174 taacatacctagccctagtcatagccacatttgctctttgtctatttgaaagaaaaccaacattaccacttccatttgatctcacagtagatattattat 273  Q
    ||||||||||||||||||| || ||||||||  ||||||||||||| |||||||| || || || |||||  |||||||||| ||||| |||||||||||    
T  32570475 taacatacctagccctagtgattgccacattaactctttgtctattggaaagaaaccccacttttccactctcatttgatcttacagttgatattattat 32570376  T
Q  274 aatatcttcctcaccgccttggaaaccatcaacagaacgaacattaacagaaaagtcagaagtagaatcccaagtgtattgcttaactttctcctggatt 373  Q
     ||||||||||| |||||||| |||||||||||||| || ||| ||||||| ||||| | |  |||| ||  | |||| |||||||||||||| || |||    
T  32570375 tatatcttcctcgccgccttgaaaaccatcaacagaccggacactaacagagaagtcggtatcagaaaccgcaatgtactgcttaactttctcttgaatt 32570276  T
Q  374 tcattaacttgagcattatatggagatattattcctatgct 414  Q
    |||  |||||||||||||||||||||||| || ||||||||    
T  32570275 tcaaaaacttgagcattatatggagatatgatgcctatgct 32570235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 175 - 414
Target Start/End: Complemental strand, 32545456 - 32545220
Alignment:
Q  175 aacatacctagccctagtcatagccacatttgctctttgtctatttgaaagaaaaccaacattaccacttccatttgatctcacagtagatattattata 274  Q
    |||||||||||||||||| || || |||||||||||||||||||| |||||||||||||| || |||||   ||||||||| ||||||||||| |||||     
T  32545456 aacatacctagccctagtgattgcaacatttgctctttgtctattggaaagaaaaccaacttttccactcagatttgatctaacagtagatatgattatg 32545357  T
Q  275 atatcttcctcaccgccttggaaaccatcaacagaacgaacattaacagaaaagtcagaagtagaatcccaagtgtattgcttaactttctcctggattt 374  Q
    || ||||| || || ||||| ||||||||||||||||||||| |||||||||||| || |   ||| ||    |||| ||||| |||||||| |||||||    
T  32545356 atgtcttcttcgccaccttgaaaaccatcaacagaacgaacactaacagaaaagttaggatccgaaacc---atgtactgcttcactttctcttggattt 32545260  T
Q  375 cattaacttgagcattatatggagatattattcctatgct 414  Q
    ||| |||||| || || || |||||||| |||||||||||    
T  32545259 catgaacttgtgccttgtaaggagatatgattcctatgct 32545220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 244 - 415
Target Start/End: Original strand, 32530886 - 32531057
Alignment:
Q  244 tccatttgatctcacagtagatattattataatatcttcctcaccgccttggaaaccatcaacagaacgaacattaacagaaaagtcagaagtagaatcc 343  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| || | |||| ||| | ||    
T  32530886 tccattagatctcacagtagatattattataatgtcttcctcaccaccttgaaaaccatcaacagaacgaacatttacagagaacttagaattagcaacc 32530985  T
Q  344 caagtgtattgcttaactttctcctggatttcattaacttgagcattatatggagatattattcctatgcta 415  Q
      |||||| |||| || || |||||| ||||||| |||||||||||||||||||||||  ||||||||||||    
T  32530986 ttagtgtactgctcaatttcctcctgaatttcataaacttgagcattatatggagatacgattcctatgcta 32531057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 32570646 - 32570556
Alignment:
Q  18 ttagcatcaagaactacatttcgccagaccgagtcactgttgattagagtagctgcatttcctaatatccaaaggcaatatctgcgcaaaa 108  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32570646 ttagcatcaagaactacatttctccaaaccgagtcactgttgattagagtagctgcatttcctaatatccaaaggcaatatctgcacaaaa 32570556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 177 - 415
Target Start/End: Original strand, 32511925 - 32512160
Alignment:
Q  177 catacctagccctagtcatagccacatttgctctttgtctatttgaaagaaaaccaacattaccacttccatttgatctcacagtagatattattataat 276  Q
    |||||||||||||||| || || ||||| | |||||||||||| |||||||||||||| || ||||    ||||||||| ||||||||||||||||| |     
T  32511925 catacctagccctagtgattgcaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatctaacagtagatattattatgag 32512024  T
Q  277 atcttcctcaccgccttggaaaccatcaacagaacgaacattaacagaaaagtcagaagtagaatcccaagtgtattgcttaactttctcctggatttca 376  Q
     ||||| || |||||||| ||||||||||||||||| |||||||  || |||| || ||  ||| ||    |||| ||||| ||| |||| |||||||||    
T  32512025 gtcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggagccgaaacc---atgtactgcttcactctctcttggatttca 32512121  T
Q  377 ttaacttgagcattatatggagatattattcctatgcta 415  Q
    | |||||| || || ||||||||||| || |||||||||    
T  32512122 tgaacttgcgccttgtatggagatatgatccctatgcta 32512160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 32530701 - 32530799
Alignment:
Q  18 ttagcatcaagaactacatttcgccagaccgagtcactgttgattagagtagctgcatttcctaatatccaaaggcaatatctgcgcaaaatgaactca 116  Q
    |||||||||| ||| ||||||| ||| || ||| |||||||||||||||||| ||||||||||||||||||||| || ||||||| |||||||||||||    
T  32530701 ttagcatcaataacaacatttctccatacagagccactgttgattagagtagatgcatttcctaatatccaaagacagtatctgcacaaaatgaactca 32530799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 329
Target Start/End: Original strand, 28855428 - 28855580
Alignment:
Q  177 catacctagccctagtcatagccacatttgctctttgtctatttgaaagaaaaccaacattaccacttccatttgatctcacagtagatattattataat 276  Q
    |||||||||||| |||||  ||||| ||||||| |||||| || ||||||||||| |  ||  ||    | || |||||||| || || |||||||| ||    
T  28855428 catacctagcccgagtcagtgccacgtttgctcgttgtctgttggaaagaaaacctatttttgcatcctcgttagatctcacggtggagattattattat 28855527  T
Q  277 atcttcctcaccgccttggaaaccatcaacagaacgaacattaacagaaaagt 329  Q
    |||||| ||||||||||| || ||||| |||||||||||| ||||||| ||||    
T  28855528 atcttcttcaccgccttgaaagccatcgacagaacgaacactaacagagaagt 28855580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 28866428 - 28866477
Alignment:
Q  257 acagtagatattattataatatcttcctcaccgccttggaaaccatcaac 306  Q
    ||||||||||||||||| | ||| || ||||| |||||||||||||||||    
T  28866428 acagtagatattattatcacatcctcttcacccccttggaaaccatcaac 28866477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 17737155 - 17737227
Alignment:
Q  18 ttagcatcaagaactacatttcgccagaccgagtcactgttgattagagtagctgcatttcctaatatccaaa 90  Q
    |||||||||||||||||||||| | | ||  ||||||||||||||| |||| ||||||| |||||||||||||    
T  17737155 ttagcatcaagaactacatttctcaaaacaaagtcactgttgattaaagtatctgcattccctaatatccaaa 17737227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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