View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_high_14 (Length: 416)
Name: NF20335_high_14
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 36678320 - 36678649
Alignment:
| Q |
18 |
cttggttaagctttgaaaaagtattagtttcaatgatcaaatcataactacagatatatactcctaagtatctaagatagatggctcctaactgattgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36678320 |
cttggttaagctttgaaaaagtattagtttcaatgatcaaatcataactatagatatatactcctaagtatctaagatagctggctcctaactgattgat |
36678419 |
T |
|
| Q |
118 |
ggtgcactttggacaagctttgagaaagagcactttttatgattaaggttttatagagctttttgttagaagctactctttctagcatctaataagagta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36678420 |
ggtgcactttggacaagctttgagaaagagcactttttatgattaaggttttatagagctttttgttataagctactctttctagcatctaataagagta |
36678519 |
T |
|
| Q |
218 |
taaatcccatttctttgcttttttcaataactgatccaattaccataatttttggacatttttaattaaaaaattgcttattttcataaaaatgtgttaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
36678520 |
taaatcccatttctttgcttttttcaataactgatccaattaccataatttttggacatttttaattaaaaaattgtttattttaataaaaatgtgttaa |
36678619 |
T |
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| Q |
318 |
caaacatgccctctgtcacaagatatgcta |
347 |
Q |
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| T |
36678620 |
caaacatgccctctctcacaagatatgcta |
36678649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 36656255 - 36656516
Alignment:
| Q |
18 |
cttggttaagctttgaaaaagtattagtttcaatgatcaaatcataactacagatatatactcctaagtatctaagatagatggctcctaactgattgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36656255 |
cttggttaagctttgaaaaagtattagtttcaatgatcaaatcataactatagatatatactcctaagtatctaagatagctggctcctaactgattgat |
36656354 |
T |
|
| Q |
118 |
ggtgcactttggacaagctttgagaaagagcactttttatgattaaggttttatagagctttttgttagaagctactctttctagcatctaataagagta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36656355 |
ggtgcactttggacaagctttgagaaagagcactttttatgattaaggttttatagagctttttgttagaagctactctttctagcatctaataagagta |
36656454 |
T |
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| Q |
218 |
taaatcccatttctttgcttttttcaataactgatccaattaccataatttttggacatttt |
279 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36656455 |
taaatcccatttctttgcttttttcaatagctgatccaattaccataatttttggacatttt |
36656516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 36649369 - 36649698
Alignment:
| Q |
17 |
acttggttaagctttgaaaaagtattagtttcaatgatcaaatcataactacagatatatactcctaagtatctaagatagatggctcctaactgattga |
116 |
Q |
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|||||||| | ||||||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||| | ||||||||| |||||||||||| ||||| |
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| T |
36649369 |
acttggtttacctttgaaaaagtattggtttcaatggtcaaatcctaactatagatatatactcctaagcacctaagatagctggctcctaactaattga |
36649468 |
T |
|
| Q |
117 |
tggtgcactttggacaagctttgagaaagagcactttttatgattaaggttttatagagctttttgttagaagctactctttctagcatctaataagagt |
216 |
Q |
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|||||||||| ||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36649469 |
tggtgcactt-ggacaagctttgaaaaagagcactttt-atgattaaggatttatagagctttttgttagaagctactctttctagcatctaataaaagt |
36649566 |
T |
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| Q |
217 |
ataaatcccatttctttgcttttttcaataactgatccaattaccataatttttggacatttttaatt-aaaaaattgcttattttcataaaaatgtgtt |
315 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |
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| T |
36649567 |
ataaatcccatttctctgcttttttcaataactgatccaattaccataatttttggacatttttaattaaaaaaactgcttattttaataaaaatgtgtt |
36649666 |
T |
|
| Q |
316 |
aacaaacatgccctctgtcacaagatatgcta |
347 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |
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| T |
36649667 |
aacaaacatgccctctgtcataagatatgcta |
36649698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 405
Target Start/End: Original strand, 36656537 - 36656576
Alignment:
| Q |
366 |
ttataaatagataatacaagatagactatttattgatatt |
405 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |
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| T |
36656537 |
ttataaatagataataaaagatagactatttattgatatt |
36656576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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