View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_high_22 (Length: 329)
Name: NF20335_high_22
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_high_22 |
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| [»] scaffold1118 (2 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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Alignment Details
Target: scaffold1118 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 129 - 308
Target Start/End: Complemental strand, 1184 - 995
Alignment:
| Q |
129 |
tatgagaaatgagtttgttttctatcttttatttcccataacatggtatcattgaggctctctcatttccatggaga------gttag----tagttaca |
218 |
Q |
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| T |
1184 |
tatgagaaatgagtttgtattctatcttttaattcccatgacatggtatcattgagcctctctcatttccacggagaaagttcgttagaagttagttaca |
1085 |
T |
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| Q |
219 |
agttcattcttcattaattttccttgaatcttcattggttttccttgaaccttcatcaattttcttcgtggtttttcctgtgttttcctt |
308 |
Q |
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| T |
1084 |
aattcattcttcatcaattttccttgaatcttcatcgtttttccttgaacgttcgtcaattttctttgcaggttttcctgttttttcctt |
995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 1323 - 1222
Alignment:
| Q |
16 |
ataaatcctagttcataaagcttacttgcactacaagctacctagtgtttgtaagaaattagcttactccacttcattagcatgtaattaggtgttgtgt |
115 |
Q |
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| T |
1323 |
ataaatcctagttcataaagcttacttgcactgcaagctacctagtgtt-------aattagtttaatccacttcattagcatgtaattaggtgttgtgt |
1231 |
T |
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| Q |
116 |
atctcatgc |
124 |
Q |
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| T |
1230 |
atctaatgc |
1222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 1237 - 1189
Alignment:
| Q |
16 |
ataaatcctagttcataaagcttacttgcactacaagctacctagtgtt |
64 |
Q |
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| T |
1237 |
ataaatcctagttcataaagcttacttgcactacaagctacctagtgtt |
1189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 1162 - 1118
Alignment:
| Q |
67 |
taagaaattagcttactccacttcattagcatgtaattaggtgtt |
111 |
Q |
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| T |
1162 |
taagaaattagcttactccacttcattagcatgtaattaggtgtt |
1118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 40904324 - 40904352
Alignment:
| Q |
129 |
tatgagaaatgagtttgttttctatcttt |
157 |
Q |
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| T |
40904324 |
tatgagaaatgagtttgttttctatcttt |
40904352 |
T |
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