View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_high_5 (Length: 474)
Name: NF20335_high_5
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 13068487 - 13068951
Alignment:
| Q |
1 |
tttgtttggcctcaagaattatgttatgtcccgtgaaacattctcattctcattctaatacatcataaccaaaaatcaaaattaattacatatcaaacac |
100 |
Q |
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| T |
13068487 |
tttgtttggcctcaagcattatgttatgtcccgtgaaacattctcattctcattctaatacatcataacaaaaaatcaaaattaattacatatcaaacac |
13068586 |
T |
|
| Q |
101 |
ccatttacacataattacacaagtgaac---aacaatcaatatggcaagtgcaaggagattgggcatagctatggatttctcaccatgcagcattaaggc |
197 |
Q |
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| T |
13068587 |
ccatttacacataattacacaagtgaacgacaacaatcaatatggcaagtgcaaggagattgggcatagctatggatttctcaccatgcagcattaaggc |
13068686 |
T |
|
| Q |
198 |
ttttcaatggacagtggataacattgtgaaagaaggtgataacctcattcttattatcattcgcccagaagagtatgagcatggagaaatgcagctttgg |
297 |
Q |
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| T |
13068687 |
ttttcaatggacagtggataacattgtgaaagaaggtgataacctcattcttattatcattcgcccagaagagtatgagcatggagaaatgcagctttgg |
13068786 |
T |
|
| Q |
298 |
gaagttactggctcacgtaagtaattgcaatcttcttgcttttacaaattattacacaaaggagaaaagtattatcaattaaagtggta-atattgtgat |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13068787 |
gaagttactggctcacgtaagtaattgcaatcttcttgcttttacaaattattacacaaaggagaaaagtattatcaattaaagtggtatatattgtgat |
13068886 |
T |
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| Q |
397 |
tattttacaaattttcttggcaaattttgaatcatgctctttgaaattacaatgtcaaattattc |
461 |
Q |
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| T |
13068887 |
tattttacaatttttcttggcaaattttgaatcatgctctttgaaattacaatgtcaaattattc |
13068951 |
T |
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