View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_high_6 (Length: 467)
Name: NF20335_high_6
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 35105177 - 35105631
Alignment:
| Q |
1 |
cacttcctcgcaccaactatgctcgtcctcgttgttttcgtgtcttctctcaatccaacacagaaacagtgcagataataagaaagtgttcccctttcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35105177 |
cacttcctcgcaccaactatgctcgtcctcgttgttttcgtgtcttctctcaatccaacacagaaacagtgcagataataagaaagtgttcccctttcct |
35105276 |
T |
|
| Q |
101 |
agaaagttcaatgcttgttggnnnnnnnnnnnnnnnnnnnnnnnnngctgtagactcatcacatgagtggaaagttgttcctgatatttggagatcttct |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35105277 |
agaaagttcaatgcttgttggtaataataataataataataatgctgctgtagactcatcacatgagtggaaagttgttcctgatatttggagatcttct |
35105376 |
T |
|
| Q |
201 |
gctgaaaaatatggtgataaagtagccttagtagatcaatatcatcatcctccttcaactatcacatataatcaggtcnnnnnnnnnnn---agcactgg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
35105377 |
gctgaaaaatatggtgataaagtagccttagtagatcaatatcatcatcctccttcaactatcacatataatcaggtcttttttttttctttagcactag |
35105476 |
T |
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| Q |
298 |
aaaaaataagttactattttttatcctttatattgttcttatactttgttttggcatctattgcagttggagcaggcaattttggattttgcagaaggcc |
397 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35105477 |
aaaaaataagttgctattttttatcctttatattgttcttatactttgttttggcatctattgcagttggagcaggcaattttggattatgcagaaggcc |
35105576 |
T |
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| Q |
398 |
taagagttattggagtaaggccggatgaaaagcttgcactttttgcagataattc |
452 |
Q |
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| T |
35105577 |
taagagttattggagtaaggccggatgaaaagcttgcactttttgcagataattc |
35105631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 38123143 - 38123029
Alignment:
| Q |
163 |
atgagtggaaagttgttcctgatatttggagatcttctgctgaaaaatatggtgataaagtagccttagtagatcaatatcatcatcctccttcaactat |
262 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||| || || ||||||||||||||||| || ||||||||||||||| |||||||||||||||| |
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| T |
38123143 |
atgagtggaaagctgttcctgatatttggagaacttctgcagagaagtatggtgataaagtagctttggtagatcaatatcatgatcctccttcaactat |
38123044 |
T |
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| Q |
263 |
cacatataatcaggt |
277 |
Q |
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| T |
38123043 |
gacatacaaacaggt |
38123029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 38136355 - 38136256
Alignment:
| Q |
163 |
atgagtggaaagttgttcctgatatttggagatcttctgctgaaaaatatggtgataaagtagccttagtagatcaatatcatcatcctccttcaactat |
262 |
Q |
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||||||||||| |||||||||||||||||| ||||||||| || |||||||||||| | || | |||||| ||||||| |||||||||||||||| |
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| T |
38136355 |
atgagtggaaaacagttcctgatatttggagaagttctgctgagaagtatggtgataaaattgctctcatagatccatatcatgatcctccttcaactat |
38136256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 453
Target Start/End: Complemental strand, 38136028 - 38135937
Alignment:
| Q |
362 |
agttggagcaggcaattttggattttgcagaaggcctaagagttattggagtaaggccggatgaaaagcttgcactttttgcagataattct |
453 |
Q |
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|||||||| | ||||| ||||| ||||| || ||| | ||||||||||||||||| || |||||||| |||| |||||||| ||||||||| |
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| T |
38136028 |
agttggaggatgcaatattggactttgctgagggcttgagagttattggagtaagtcccaatgaaaagattgcgctttttgctgataattct |
38135937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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