View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_low_10 (Length: 438)
Name: NF20335_low_10
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 43083142 - 43083540
Alignment:
| Q |
17 |
agaagccacttgcgccttaatcaaaactacttcaccaaacacactcagaacgttttatacaaaggaaactgctaataatatctttaggatattcattaat |
116 |
Q |
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| T |
43083142 |
agaagccacttgcgccttaatcaaaactacttcaccaaacacactcagaacgttttatacaaaggaaactgctaataatatctttaggatattcattaat |
43083241 |
T |
|
| Q |
117 |
aaaatatggatgtgatgtgtataaaaatagtgtattcagagaaggtgtcacttcaggaaatggttaagagctcgatctcttgctcttttgaattgagaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43083242 |
aaaatatggatgtgatgtgtataaaaatagtgtattcagagaaggtgtcacttcaggaaatggttaagagctcaatctcttgctcttttgaattgagaaa |
43083341 |
T |
|
| Q |
217 |
attcagagaaggaaaaactcatcttgtgtgtaacggnnnnnnnnnatagagattagtcacgttaattgataataaaacttagtatatatactatatannn |
316 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43083342 |
attcagagaaggaaaaactcatcttgtgtgtaacag-gtttttttatagagattagtcacgttaattgataataaaacttagtatatatactatatattt |
43083440 |
T |
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| Q |
317 |
nnnnnnnnnngtaactagtgttcttaggacacttcttatcatctttcatgttttttctacgatttcaaagaatctatacaattatggggtccaatctgtg |
416 |
Q |
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||||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||| |
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| T |
43083441 |
ttggttttttgtaactagtgttcttagcacacttcttatcatcattcatattttttctaggatttcaaagaatctatacaattgtggggtccaatttgtg |
43083540 |
T |
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