View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_low_11 (Length: 428)
Name: NF20335_low_11
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 28586700 - 28586299
Alignment:
| Q |
1 |
tcttcttcaatcagatcaagttttattcagtggaggatctacagattctatc-gtttctgaatacagcaacaatcctacaacttttaagtctgactttgc |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||| |||||||||||||||||||||||||| || || |||||||| |
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| T |
28586700 |
tcttcttcaatcagatcaagttttattcagtggagggtctacaaattctttttgtttcagaatacagcaacaatcctacaactttcaaatccgactttgc |
28586601 |
T |
|
| Q |
100 |
agctgctatgataaagatgggagatattgaacccttgactgggtcggctggtatcataagaagcatctgcagtgcagtcaactaattatacaatttcatt |
199 |
Q |
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| |||||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28586600 |
aactgctatgataaagatgggagatattgaacccttaaccggatcggctggagtcataagaagcatatgcagtgcagtcaactaattatacaatttcatt |
28586501 |
T |
|
| Q |
200 |
cttgattaacaagaaatcaattgccaattgttttgtatatagaattttatagctatgagaacattgcttgaaacttctgttatcgaaaaagatgattgta |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28586500 |
cttgattaacaagaaatcaattgccaattgttttgtatatagaattttatagctatgagaacattgcttgaaacttctgttatcgaaaaagatgagtgta |
28586401 |
T |
|
| Q |
300 |
ttatataactcataaaaaatacattttggtatgttcattagtgtcaaataaaatcaattgagaatttgagattgccttttataattcccttttttatatt |
399 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28586400 |
tt---taactcataaaaaatacattttggtatgttca-tagtgtcaaataaaatcaattgagaatttgagattgccttttataattcccttttttatatt |
28586305 |
T |
|
| Q |
400 |
agctct |
405 |
Q |
| |
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|||||| |
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| T |
28586304 |
agctct |
28586299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 28591788 - 28591583
Alignment:
| Q |
1 |
tcttcttcaatcagatcaagtttt-attcagtggaggatctacagattctatcgtttctgaatacagcaacaatcctacaacttttaagtctgactttgc |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591788 |
tcttcttcaatcagatcaagtttttattcagtggaggatctacagattctatcgtttctgaatacagcaacaatcctacaacttttaagtctgactttgc |
28591689 |
T |
|
| Q |
100 |
agctgctatgataaagatgggagatattgaacccttgactgggtcggctggtatcataagaagcatctgcagtgcagtcaactaattatacaatttcatt |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| | |
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| T |
28591688 |
agctgctatgataaagatgggagatattgaacccttgactgggtcggctggtatcataagaagcatctgcagtgctgtcaactaatcatacaaattcttc |
28591589 |
T |
|
| Q |
200 |
cttgat |
205 |
Q |
| |
|
|||||| |
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|
| T |
28591588 |
cttgat |
28591583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 28596186 - 28596380
Alignment:
| Q |
1 |
tcttcttcaatcagatcaagttttattcagtggag---gatctacagattctatcgtttctgaatacagcaacaatcctacaacttttaagtctgacttt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
28596186 |
tcttcttcaatcagatcaagttttattcggtggaggaggatctacagattctatcgtttctgaatacagcaaaaatcctacaacttttaagtctgacttt |
28596285 |
T |
|
| Q |
98 |
gcagctgctatgataaagatgggagatattgaacccttgactgggtcggctggtatcataagaagcatctgcagtgcagtcaactaattatacaa |
192 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||| || || || ||||| ||||||||||| || |||||||| |||| ||||| ||||| |
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| T |
28596286 |
gccgctgctatgataaagatgggagatatccaacccttaaccggatctgctggaatcataagaagtatatgcagtgctatcaattaattttacaa |
28596380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 32494406 - 32494582
Alignment:
| Q |
1 |
tcttcttcaatcagatcaagttttattcagtggag---gatctacagattctatcgtttctgaatacagcaacaatcctacaacttttaagtctgacttt |
97 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |
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| T |
32494406 |
tcttcttcaatcagatcaagttttatttggtggaggaggatctacagattctatcgtttctgaatacagcaaaaatcctactacttttaagtcagacttt |
32494505 |
T |
|
| Q |
98 |
gcagctgctatgataaagatgggagatattgaacccttgactgggtcggctggtatcataagaagcatctgcagtgc |
174 |
Q |
| |
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|| |||||||||||||||||||||||||| ||||||| || || || ||||| ||||||||||| || |||||||| |
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| T |
32494506 |
gctgctgctatgataaagatgggagatatccaacccttaaccggatctgctggaatcataagaagtatatgcagtgc |
32494582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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