View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_low_12 (Length: 428)
Name: NF20335_low_12
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Original strand, 28595639 - 28596038
Alignment:
| Q |
13 |
aatatcataatatatgacatatttacatttataatgatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagta |
112 |
Q |
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| T |
28595639 |
aatatcataatatatgacatatttacatttataatcatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagta |
28595738 |
T |
|
| Q |
113 |
aaa-gtttggccaattcagaccttccaaaatttacagatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtga |
211 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28595739 |
aaaagtttggccaattcagaccttccaaaatttacagatgatctaacaactctaatatcccattttaccaataaaggtcttactctcaaagatatggtta |
28595838 |
T |
|
| Q |
212 |
ctttatctggtaagttcatcactaaccca---nnnnnnncaaacatgcaaatctttatatttgtgtatatgactaatttgtaaacctatgcttattcgac |
308 |
Q |
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| T |
28595839 |
ctttatctggtaagttcatcactaacccatttttttttcaaaacatggaaatctttatatttgtgtatatgactaatttgtaaacctatgcttattcgac |
28595938 |
T |
|
| Q |
309 |
aaattaatattggtcaatctgattttaactcaggtgctcacacaatcggacaagctcaatgcttcacttttcgtgacaggatatataacaatgcaagtga |
408 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595939 |
aaattaatattggtcaatctaattttaactcaggtgctcacacaatcggacaagctcaatgcttcacttttcgtgacaggatatataacaatgcaagtga |
28596038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 26 - 408
Target Start/End: Original strand, 32493873 - 32494258
Alignment:
| Q |
26 |
atgacatatttacatttataatgatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaa |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| |||||| |||||| |
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| T |
32493873 |
atgacatatttacatttataatgatgcaggtgggtggtccgtcatggacggtaaaactcggaagaagagactccaccgttgctagcaaaagtcaggccaa |
32493972 |
T |
|
| Q |
126 |
ttcagaccttccaaaatttacagatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtgactttatctggtaag |
225 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32493973 |
ttcagaccttccaaaatttacggatgatctaacaactcttatagcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaag |
32494072 |
T |
|
| Q |
226 |
ttcatcactaacccannnnnnncaaacatgcaaa----tctttatatttgtgtatatgactaatttgtaaacctatgcttattcgacaaattaatattgg |
321 |
Q |
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| T |
32494073 |
ttcatcactgacccatttgtttcaaacatgcacatgtttatttatatttgtgtgtatggctgatttataaacctatgcttatttgacaaattaatatcgg |
32494172 |
T |
|
| Q |
322 |
tcaatctgattttaactcaggtgctcacacaatcggacaagctcaatgcttcacttttcgtgacaggatatataacaatgcaagtga |
408 |
Q |
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| T |
32494173 |
tcaatttga-tttaactcaggtgctcacacaatcggacaagctcaatgcttcacttttcgtgacaggatatataacaatgcaagtga |
32494258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 58 - 408
Target Start/End: Complemental strand, 28587203 - 28586849
Alignment:
| Q |
58 |
ggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttacagatgatctaa |
157 |
Q |
| |
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||||| || |||||||| |||||||||||||||||||||||||| | || || ||||||||||||||| | |||||||| ||||||||| ||||| | |
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| T |
28587203 |
ggtggcccgtcatggacagtaaaacttggaagaagagactctacaacagcaagcaaaagtttggccaataccgaccttccgttatttacagacgatctta |
28587104 |
T |
|
| Q |
158 |
caactcttatatcccattttaccaataaaggtcttactctcaaagatatggtgactttatctggtaagtt--catcactaacccannnnnnncaaacatg |
255 |
Q |
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||||||||||||| ||||||| || ||| ||| | | |||||| ||||| ||| |||| ||||| || ||| |||| || |||||||| |
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| T |
28587103 |
caactcttatatctcattttagtaaaaaaaatctctcccccaaagagatggttactctatccggtaaattttcattactagttcatttgtttcaaacatg |
28587004 |
T |
|
| Q |
256 |
caaatctttatatttgtgtatatgactaatttgta---aacctatgcttattcgacaaattaatattggtcaatctgattttaactcaggtgctcacaca |
352 |
Q |
| |
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| || ||||||||||| | |||||||||||| | ||| | ||| || || |||||||||||||||||| | |||| || | |||||| |||||| |
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| T |
28587003 |
aatatttttatatttgtctgtatgactaatttttgtgtaacatttgcctacatga-aaattaatattggtcaattttatttgaatttaggtgcacacaca |
28586905 |
T |
|
| Q |
353 |
atcggacaagctcaatgcttcacttttcgtgacaggatatataacaatgcaagtga |
408 |
Q |
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| T |
28586904 |
atcggacaagctcaatgcttcacatttcgtggcagaatatacaacaatgcaagtga |
28586849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 28592312 - 28592181
Alignment:
| Q |
47 |
tgatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttac |
146 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || || ||||||||||||||| | |||||||| |||||| |
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| T |
28592312 |
tgatgcaggtgggtggtccatcatggacggtaaaacttggacggagagactctaccacagcaagcaaaagtttggccaatactgaccttccgttatttac |
28592213 |
T |
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| Q |
147 |
agatgatctaacaactcttatatcccatttta |
178 |
Q |
| |
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|| ||||| |||||||||||||| ||||||| |
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| T |
28592212 |
ggacgatcttacaactcttatatctcatttta |
28592181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 309 - 408
Target Start/End: Complemental strand, 28592035 - 28591936
Alignment:
| Q |
309 |
aaattaatattggtcaatctgattttaactcaggtgctcacacaatcggacaagctcaatgcttcacttttcgtgacaggatatataacaatgcaagtga |
408 |
Q |
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|||||||||||||||||| | ||||||| | |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||| |
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| T |
28592035 |
aaattaatattggtcaattttattttaaattaggtgcgcacacaatcggacaagctcaatgcttcacatttcgtggcaggatatacaacaatgctagtga |
28591936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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