View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20335_low_16 (Length: 384)

Name: NF20335_low_16
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20335_low_16
NF20335_low_16
[»] chr4 (3 HSPs)
chr4 (214-295)||(14135414-14135495)
chr4 (19-87)||(14135623-14135691)
chr4 (344-375)||(14135334-14135365)
[»] chr7 (1 HSPs)
chr7 (214-294)||(33819674-33819754)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 14135495 - 14135414
Alignment:
Q  214 gaattccccttcaaatcatctttttgaaacgatttgagttctgttgaattcatttttgttttgtttaaaattcaattcctca 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14135495 gaattccccttcaaatcatctttttgaaacgatttgagttctgttgaattcatttttgttttgtttaaaattcaattcctca 14135414  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 14135691 - 14135623
Alignment:
Q  19 tctacatcgatgtcttcctctcatcttcttcttcctcttgttgatgccatatgtactgtattctctgtc 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14135691 tctacatcgatgtcttcctctcatcttcttcttcctcttgttgatgccatatgtactgtattctctgtc 14135623  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 14135365 - 14135334
Alignment:
Q  344 ataaagattcctattggtgttgtttttcttct 375  Q
    ||||||||||||||||||||||||||||||||    
T  14135365 ataaagattcctattggtgttgtttttcttct 14135334  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 33819754 - 33819674
Alignment:
Q  214 gaattccccttcaaatcatctttttgaaacgatttgagttctgttgaattcatttttgttttgtttaaaattcaattcctc 294  Q
    ||||| |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  33819754 gaatttcccttcaattcatctttttgaaacgatttcagttcttttgaattcatttttgttttgtataaaattcaattcctc 33819674  T

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