View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20335_low_18 (Length: 341)
Name: NF20335_low_18
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 35411294 - 35411621
Alignment:
| Q |
1 |
aataatatcaatagattttgacaaatatgtcaacaaaggtgcttgacttggtatgaaatatcataaatatggttagccttgatctcatatacacagagtt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35411294 |
aataatatcaaaagattttgacaaatatgtcaacaaaggtgtttgacttggtatgaaatatcataaatatggttagccttgatctcatatacacagagtt |
35411393 |
T |
|
| Q |
101 |
tagatgatatcttaattgcaaacaaaattacaaaggaggcgaactgaaagaaaaaataactttaattctttaaagtggacttgaaaaaggcacatgactc |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35411394 |
tagatgatatcctaattgcaaacaaaattacgaaggaggccaactgaaagaaaaaataactttaattctttaaagtggacttgaaaaaggcacatgactc |
35411493 |
T |
|
| Q |
201 |
atctactagcattttatttatattgccattgataagatgatcttgcaagagaattggatgatataaatataaaagatgaagtttaaatctactttacttg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35411494 |
atctactagcattttatttatattgccattgataagatgatcttgcaagagaattggatgatatagatataaaagatgaagtttaaatctactttacttg |
35411593 |
T |
|
| Q |
301 |
caaattgtaggagttttgtgaaaaacat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
35411594 |
caaattgtaggagttttgtgaaaaacat |
35411621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 35413221 - 35413419
Alignment:
| Q |
13 |
agattttgacaaatatgtcaacaaaggtgcttgacttggtatgaaatatcataaatatggttagccttgatctcatatacacagagtttagatgatatct |
112 |
Q |
| |
|
||||||||||||||| || |||||||||| |||| |||||||||||||||| |||| ||||||||| ||||||| ||||| | |||||||||||| |
|
|
| T |
35413221 |
agattttgacaaataggttaacaaaggtgattgatttggtatgaaatatca-aaatgcagttagccttaatctcatgcacacaaatcttagatgatatcc |
35413319 |
T |
|
| Q |
113 |
taattgcaaacaaaattacaaaggaggcgaactgaaagaaaaaataactttaattctttaaagtggacttgaaaaaggcacatgactcatctactagcat |
212 |
Q |
| |
|
||| || |||| || |||| |||||| ||| || || |||||||||||| ||| ||||||||||| || || ||||||||| ||||| ||||||||| |
|
|
| T |
35413320 |
taaatgtaaacgaatttacggaggaggtcaaccgagag-aaaaataacttttattgtttaaagtggaatttgaagaggcacatgcctcatttactagcat |
35413418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 35407203 - 35407262
Alignment:
| Q |
269 |
ataaaagatgaagtttaaatctactttacttgcaaattgtaggagttttgtgaaaaacat |
328 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
35407203 |
ataaaagttgaagtttaaatctactttgcttgcaaattgttggagttttgtgaaaaacat |
35407262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 35410883 - 35410939
Alignment:
| Q |
269 |
ataaaagatgaagttt-aaatctactttacttgcaaattgtaggagttttgtgaaaa |
324 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
35410883 |
ataacagatgaagttttaaatctacttaacttgtaaattataggagttttgtgaaaa |
35410939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University