View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20335_low_19 (Length: 341)

Name: NF20335_low_19
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20335_low_19
NF20335_low_19
[»] chr8 (3 HSPs)
chr8 (154-323)||(27513624-27513793)
chr8 (195-323)||(8675116-8675245)
chr8 (72-121)||(34154786-34154834)
[»] chr1 (2 HSPs)
chr1 (122-295)||(39210040-39210197)
chr1 (154-323)||(24036791-24036965)
[»] chr4 (2 HSPs)
chr4 (37-121)||(47952641-47952725)
chr4 (37-121)||(26594638-26594724)
[»] chr3 (2 HSPs)
chr3 (186-292)||(9461180-9461295)
chr3 (53-121)||(47594475-47594543)
[»] chr2 (1 HSPs)
chr2 (164-276)||(38950770-38950885)
[»] chr6 (2 HSPs)
chr6 (228-280)||(18331979-18332031)
chr6 (159-226)||(18331878-18331945)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 154 - 323
Target Start/End: Original strand, 27513624 - 27513793
Alignment:
Q  154 aatatatattctacactcacaacattggaatataatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 253  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  254 gcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctctggaagctac 323  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctctggaagctac 27513793  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 195 - 323
Target Start/End: Complemental strand, 8675245 - 8675116
Alignment:
Q  195 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaa-g 293  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||      
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc 8675146  T
Q  294 gtcttcggcaccttcttctctggaagctac 323  Q
    |||||||||||||||||||| ||| |||||    
T  8675145 gtcttcggcaccttcttctccggaggctac 8675116  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 34154786 - 34154834
Alignment:
Q  72 aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 121  Q
    ||||||||| | |||||||||||||| |||||||||| ||||||||||||    
T  34154786 aggtgtagaattgtatgttgccacat-agtgtgtcaatgtatcatctctc 34154834  T

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Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 122 - 295
Target Start/End: Complemental strand, 39210197 - 39210040
Alignment:
Q  122 ttcttgtatacatcaaatggagcctccattataatatatattctacactcacaacattggaatataatctattcatattcaaattagttcaaaacaatca 221  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||              
T  39210197 ttcttgtatacatcaaatggaacctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttc---------- 39210108  T
Q  222 aaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt 295  Q
          |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210107 ------aaaaaaatcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt 39210040  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 154 - 323
Target Start/End: Original strand, 24036791 - 24036965
Alignment:
Q  154 aatatatattctacactcacaacattggaatataatctattcatattcaaatt-agttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 252  Q
    ||||||||||||||||||| ||||||| ||| | || |||| |||| |||||| || ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  253 ----ggcttgcagatagtttcatcaacttcccttgtattttc-aaggtcttcggcaccttcttctctggaagctac 323  Q
        |||||||||||||||||||||||||  ||||||| ||| |   ||||||||| ||| ||||| |||||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtatcttcgatcatcttcggcagctttttctccggaagctac 24036965  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 47952641 - 47952725
Alignment:
Q  37 tatcattatttattggttttttattaggatatggaaggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 121  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47952641 tatcattatttattgtttttttattagcatatgggaggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 47952725  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 26594638 - 26594724
Alignment:
Q  37 tatcattatttattggttttttattaggatatg-ga-aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 121  Q
    ||||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  26594638 tatcattatttattgtttttttattggtatatgagagaggtgtagagtggtatgttgccacataagtgtgtccatgtatcatctctc 26594724  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 292
Target Start/End: Complemental strand, 9461295 - 9461180
Alignment:
Q  186 taatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaact 276  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9461295 taatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaact 9461196  T
Q  277 tcccttgtattttcaa 292  Q
    ||| |  |||||||||    
T  9461195 tccttcttattttcaa 9461180  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 47594543 - 47594475
Alignment:
Q  53 ttttttattaggatatggaaggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 121  Q
    ||||||||| | || ||| ||||||||| ||||||||||||| ||| | |||||||||||||| |||||    
T  47594543 ttttttattggcatttgggaggtgtagaatggtatgttgccatataggggtgtcaacgtatcagctctc 47594475  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  164 ctacactcacaacattggaatataatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 257  Q
    ||||||||||||| ||| ||| ||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  258 gcagatagtttcatcaact 276  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  228 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 280  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  159 atattctacactcacaacattggaatataatctattcatattcaaattagttcaaaacaatcaaaatt 226  Q
    ||||||||||||||||| |||| ||| ||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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