View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_low_2 (Length: 629)
Name: NF20335_low_2
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 490; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 2137168 - 2137701
Alignment:
| Q |
1 |
agaaaataacgaaaatcctaattagtgttattcttagggttgtattacatttgctgaaacatgattcaatgcactatgtaaagcttgatttaatagtaaa |
100 |
Q |
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| T |
2137168 |
agaaaataccgaaaatcctaattagtgttattctcagggttgtgttacatttgctgaaccatgattcaatgcactatgtaaagcttgatttaatagtaaa |
2137267 |
T |
|
| Q |
101 |
tgcaataacaactttattttatagagccgtaaactaccggcagcatcattgatcactaatagaaccagttttggtgaagcttaaacaacatagctttctc |
200 |
Q |
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| T |
2137268 |
tgcaataacaattttattttatagagccgtaaactacccgcagcatcattgatcactaatagaaccagttttggtgaagcttaaacaacatagctttctc |
2137367 |
T |
|
| Q |
201 |
taaggcactcatacacagaaggtccaaaatcacgctctaaggctcatgttaaatcaagccatgaatgaaacgggtgggagggttgcatcatttggaacca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
2137368 |
taaggcactcatacacagaaggtccaaaatcacgctctaaggctcgtgttaaatcaagccatgaatgaaacgggtgggacgtttgcatcatttggaacca |
2137467 |
T |
|
| Q |
301 |
aggacaaggaggaacaaccctctaaatccaaatgcaattgttaatgtatgcatctatctatctattacatcaaattgaacataaccaatttggccgtcat |
400 |
Q |
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| T |
2137468 |
aggacaaggaggaacaaccctctaaatccaaatgcaattgttaatgtatgcatctatctatctattacatcaaattgaacataaccaatttggtcgtcat |
2137567 |
T |
|
| Q |
401 |
agttttccagaaatttgataacaaagaatggacaatgcagttttttgggggcattgtgtgtgatactgtgtattttctttcctatttgaaacatctctta |
500 |
Q |
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| T |
2137568 |
agttttccagaaatttgataacaaagaatggacaatgcagttttttgggggcattgtgtgtgatactgtgtattttctttcctttttgaaacatctctta |
2137667 |
T |
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| Q |
501 |
tattttgaactgtaatatgtcttataaattcaat |
534 |
Q |
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| T |
2137668 |
tattttgaactgtaatatgtcttataaattcaat |
2137701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 149 - 325
Target Start/End: Original strand, 2128017 - 2128193
Alignment:
| Q |
149 |
ttgatcactaatagaaccagttttggtgaagcttaaacaacatagctttctctaaggcactcatacacagaaggtccaaaatcacgctctaaggctcatg |
248 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
2128017 |
ttgatcactaatagaatcagttttggtgaagcttaaacaacatagctttctctagggcactcatacaaagaaggtccaaaatcacgctctaaggctcgtg |
2128116 |
T |
|
| Q |
249 |
ttaaatcaagccatgaatgaaacgggtgggagggttgcatcatttggaaccaaggacaaggaggaacaaccctctaa |
325 |
Q |
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| T |
2128117 |
ttaaatcaagccatgaatgaaacgggtgggacgtttgcatcatttggaaccaaggataaggaggaacaaccctctaa |
2128193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 537 - 611
Target Start/End: Original strand, 2137732 - 2137806
Alignment:
| Q |
537 |
aatcaaattcataacattttagaaatcataaagtttaacatatctcaccgactgtttggttgagttgatcacagt |
611 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2137732 |
aatcaaattcataaaattttagaaatcatcaagtttaacatatctcaccgactgtttggttgagttgatcacagt |
2137806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 2081273 - 2081176
Alignment:
| Q |
208 |
ctcatacacagaaggtccaaaatcacgctctaaggctcatgttaaatcaagccatgaatgaaacgggtggga-gggttgcatcatttggaaccaagga |
304 |
Q |
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||||||||||||||||||||||||| ||||||| |||| ||| |||||| || | ||||||| |||||||| |||||||||||||||||||||| |
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| T |
2081273 |
ctcatacacagaaggtccaaaatcaagctctaacgctcgtgtaaaatcacgctgttaatgaaatgggtgggacattttgcatcatttggaaccaagga |
2081176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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