View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_low_21 (Length: 330)
Name: NF20335_low_21
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 212 - 327
Target Start/End: Original strand, 50834313 - 50834426
Alignment:
| Q |
212 |
atgaaatctgattgttattggaatttttaagtattcacggagccactgcaacatacaaccactccctcttttcctcactctctctaacgtaacaacacag |
311 |
Q |
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| T |
50834313 |
atgaaatctgattgttattggaatttt-aattattcacgaagccactacaacatacaaccactccctcttttcctcactctctctaacgtaacaacaca- |
50834410 |
T |
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| Q |
312 |
accctattctccttct |
327 |
Q |
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|||||||||| ||||| |
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| T |
50834411 |
accctattcttcttct |
50834426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 212 - 327
Target Start/End: Complemental strand, 50841540 - 50841427
Alignment:
| Q |
212 |
atgaaatctgattgttattggaatttttaagtattcacggagccactgcaacatacaaccactccctcttttcctcactctctctaacgtaacaacacag |
311 |
Q |
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||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841540 |
atgaaatctgattgttattggaatttt-aattattcacgaagccactacaacatacaaccactccctcttttcctcactctctctaacgtaacaacaca- |
50841443 |
T |
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| Q |
312 |
accctattctccttct |
327 |
Q |
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|||||||||| ||||| |
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| T |
50841442 |
accctattcttcttct |
50841427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 54544083 - 54544009
Alignment:
| Q |
19 |
cattaattgctaatcactttaatcctaaaaaa-tttccctccttccatatttgaaatttgaatttcaaattttgc |
92 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||| ||| || | | |||||||||||||||||||||| |
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| T |
54544083 |
cattaattgctaatcactttaatcttaaaaaaatttccctctttctatttgttaaatttgaatttcaaattttgc |
54544009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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