View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_low_23 (Length: 327)
Name: NF20335_low_23
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 30956692 - 30956392
Alignment:
| Q |
17 |
agtaatgtcaatatcccacaaataagggaaagcccaacggcccctaaagttgcaaaccatattagaggcaacttgaacaatccacaatcaacaccaacct |
116 |
Q |
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| T |
30956692 |
agtaatgtcaatatcccacaaataagggaaagcccaacggcccctaaagttgcaaaccatattagaggcaactcgaacaatccacaatcaacaccaacct |
30956593 |
T |
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| Q |
117 |
ttgaagccttgcgaaccagctcgggaaagtaaaaaaggggtgcagaaattattagtagtatacagaaaatctgcagtccaagttgtagtgaacaaaccaa |
216 |
Q |
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| T |
30956592 |
ttgaagccctgcgaaccagctcgggaaagtaaaaaaggggtgcagaaattattagtagtatacagaaaatctgcagtccaagttgtagtgaacaaaccaa |
30956493 |
T |
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| Q |
217 |
catcagagtcagaaaataacacaacatgaactttgtgatatgtgttatttctggaaagaatgcttcaaatgcttccccaaaggcaagtactagtgtctgt |
316 |
Q |
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| T |
30956492 |
catcagagtcagaaaataacacaacatgaactttgtgatgtgtgttatttctggaaagaatacttcaaatgcttccccaaaggcaagtactagtgtttgt |
30956393 |
T |
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| Q |
317 |
g |
317 |
Q |
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| T |
30956392 |
g |
30956392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 118 - 311
Target Start/End: Complemental strand, 30960568 - 30960375
Alignment:
| Q |
118 |
tgaagccttgcgaaccagctcgggaaagtaaaaaaggggtgcagaaattattagtagtatacagaaaatctgcagtccaagttgtagtgaacaaaccaac |
217 |
Q |
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| T |
30960568 |
tgaagccttgcgaaccagctcggggaagtaaaaaaagggtgcagaaatcaatagtagcatacaaaatatttgtaatccaggttgtagtggaacaaccaac |
30960469 |
T |
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| Q |
218 |
atcagagtcagaaaataacacaacatgaactttgtgatatgtgttatttctggaaagaatgcttcaaatgcttccccaaaggcaagtactagtg |
311 |
Q |
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| T |
30960468 |
atcaatgtcagaaaataacacaaaatgaactttgctatttgtgtcatttctggaaagaatgctttaaatgcttccccaaatggaagtactagtg |
30960375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 30960663 - 30960602
Alignment:
| Q |
32 |
ccacaaataagggaaagcccaacggcccctaaagttgcaaaccatattagaggcaacttgaa |
93 |
Q |
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| T |
30960663 |
ccacaaatgagggaaaggccaacagcccctaaagttgcaaacccaatcaaaggcaacttgaa |
30960602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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